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1Z5U
Asym. Unit
Info
Asym.Unit (151 KB)
Biol.Unit 1 (146 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S. TYPHIMURIUM APHA COMPLEXED WITH CYCLIC-AMP
Authors
:
R. D. Makde, V. Kumar
Date
:
20 Mar 05 (Deposition) - 21 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Class-B Bacterial Acid Phosphatase, Cyclic-Amp Complex Of Apha Protein, Metalloenzyme, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. D. Makde, G. D. Gupta, V. Kumar
Structure And Function Of Class-B Bacterial Non-Specific Acid Phosphatase: Functional Role Of Invariant Lys154
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPa)
1b: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPb)
1c: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPc)
1d: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CMP
4
Ligand/Ion
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2
MG
4
Ligand/Ion
MAGNESIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:46 , ASP A:48 , ASP A:169 , HOH A:504 , HOH A:505 , HOH A:613
BINDING SITE FOR RESIDUE MG A 501
2
AC2
SOFTWARE
ASP B:46 , ASP B:48 , ASP B:169 , HOH B:509 , HOH B:619 , HOH B:620
BINDING SITE FOR RESIDUE MG B 503
3
AC3
SOFTWARE
ASP C:46 , ASP C:48 , ASP C:169 , HOH C:227 , HOH C:470 , HOH C:471
BINDING SITE FOR RESIDUE MG C 505
4
AC4
SOFTWARE
ASP D:46 , ASP D:48 , ASP D:169 , HOH D:338 , HOH D:473 , HOH D:474
BINDING SITE FOR RESIDUE MG D 507
5
AC5
SOFTWARE
ASP A:48 , PHE A:58 , ASP A:70 , TYR A:72 , LEU A:73 , GLY A:115 , ARG A:116 , THR A:194 , TYR A:195 , HOH A:503 , HOH A:505 , HOH A:613 , HOH A:614
BINDING SITE FOR RESIDUE CMP A 502
6
AC6
SOFTWARE
ASP B:48 , PHE B:58 , TYR B:72 , GLY B:115 , ARG B:116 , THR B:194 , TYR B:195 , HOH B:511 , HOH B:512 , HOH B:620 , HOH B:621 , HOH B:622
BINDING SITE FOR RESIDUE CMP B 504
7
AC7
SOFTWARE
ASP C:48 , PHE C:58 , TYR C:72 , GLY C:115 , ARG C:116 , THR C:194 , TYR C:195 , HOH C:230 , HOH C:231 , HOH C:471 , HOH C:472
BINDING SITE FOR RESIDUE CMP C 506
8
AC8
SOFTWARE
ASP D:46 , ASP D:48 , PHE D:58 , TYR D:72 , LEU D:73 , GLY D:115 , ARG D:116 , LYS D:154 , THR D:194 , TYR D:195 , HOH D:339 , HOH D:340 , HOH D:430 , HOH D:473 , HOH D:475 , HOH D:476
BINDING SITE FOR RESIDUE CMP D 508
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1z5ua_ (A:)
1b: SCOP_d1z5ub_ (B:)
1c: SCOP_d1z5uc_ (C:)
1d: SCOP_d1z5ud_ (D:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
Class B acid phosphatase, AphA
(15)
Protein domain
:
Class B acid phosphatase, AphA
(15)
Salmonella typhimurium [TaxId: 90371]
(4)
1a
d1z5ua_
A:
1b
d1z5ub_
B:
1c
d1z5uc_
C:
1d
d1z5ud_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1z5uA00 (A:7-214)
1b: CATH_1z5uC00 (C:7-214)
1c: CATH_1z5uB00 (B:5-214)
1d: CATH_1z5uD00 (D:5-214)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Salmonella typhimurium. Organism_taxid: 602.
(4)
1a
1z5uA00
A:7-214
1b
1z5uC00
C:7-214
1c
1z5uB00
B:5-214
1d
1z5uD00
D:5-214
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (151 KB)
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