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1Z3U
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (39 KB)
Biol.Unit 3 (39 KB)
Biol.Unit 4 (39 KB)
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(1)
Title
:
STRUCTURE OF THE ANGIOPOIETIN-2 RECPTOR BINDING DOMAIN AND IDENTIFICATION OF SURFACES INVOLVED IN TIE2 RECOGNITION
Authors
:
W. A. Barton, D. Tzvetkova, D. B. Nikolov
Date
:
14 Mar 05 (Deposition) - 12 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Tie2 Binding, Angiogenesis, Extracellular Ligand, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
W. A. Barton, D. Tzvetkova, D. B. Nikolov
Structure Of The Angiopoietin-2 Receptor Binding Domain And Identification Of Surfaces Involved In Tie2 Recognition.
Structure V. 13 825 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:429 , ASP A:431 , CYS A:433 , CYS A:435 , HOH A:529
BINDING SITE FOR RESIDUE CA A 497
2
AC2
SOFTWARE
ASP B:429 , ASP B:431 , CYS B:433 , CYS B:435
BINDING SITE FOR RESIDUE CA B 497
3
AC3
SOFTWARE
ASP C:429 , ASP C:431 , CYS C:433 , CYS C:435 , HOH C:557
BINDING SITE FOR RESIDUE CA C 497
4
AC4
SOFTWARE
ASP D:429 , ASP D:431 , CYS D:433 , CYS D:435
BINDING SITE FOR RESIDUE CA D 497
[
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049069 (V333I, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049069
V
333
I
ANGP2_HUMAN
Polymorphism
7813215
A/B/C/D
V
333
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FIBRINOGEN_C_1 (A:445-457,B:445-457,C:445-457,D:44...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIBRINOGEN_C_1
PS00514
Fibrinogen C-terminal domain signature.
ANGP2_HUMAN
445-457
4
A:445-457
B:445-457
C:445-457
D:445-457
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Exons
(5, 20)
Info
All Exons
Exon 1.5a (A:280-310 | B:280-310 | C:280-310 ...)
Exon 1.6 (A:311-344 | B:311-344 | C:311-344 ...)
Exon 1.7 (A:345-400 | B:345-400 | C:345-400 ...)
Exon 1.8a (A:400-444 | B:400-444 | C:400-444 ...)
Exon 1.9c (A:444-495 | B:444-495 | C:444-495 ...)
View:
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All Exon Boundaries
1: Boundary 1.4/1.5a
2: Boundary 1.5a/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8a
5: Boundary 1.8a/1.9c
6: Boundary 1.9c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000325203
1a
ENSE00001949798
chr8:
6420930-6420168
763
ANGP2_HUMAN
1-96
96
0
-
-
1.2
ENST00000325203
2
ENSE00000924724
chr8:
6390008-6389853
156
ANGP2_HUMAN
97-148
52
0
-
-
1.3
ENST00000325203
3
ENSE00000924725
chr8:
6385197-6385076
122
ANGP2_HUMAN
149-189
41
0
-
-
1.4
ENST00000325203
4
ENSE00000924726
chr8:
6378931-6378699
233
ANGP2_HUMAN
189-267
79
0
-
-
1.5a
ENST00000325203
5a
ENSE00001121511
chr8:
6377515-6377385
131
ANGP2_HUMAN
267-310
44
4
A:280-310
B:280-310
C:280-310
D:280-310
31
31
31
31
1.6
ENST00000325203
6
ENSE00000979541
chr8:
6372299-6372198
102
ANGP2_HUMAN
311-344
34
4
A:311-344
B:311-344
C:311-344
D:311-344
34
34
34
34
1.7
ENST00000325203
7
ENSE00001121499
chr8:
6371365-6371199
167
ANGP2_HUMAN
345-400
56
4
A:345-400
B:345-400
C:345-400
D:345-400
56
56
56
56
1.8a
ENST00000325203
8a
ENSE00000979543
chr8:
6366583-6366453
131
ANGP2_HUMAN
400-444
45
4
A:400-444
B:400-444
C:400-444
D:400-444
45
45
45
45
1.9c
ENST00000325203
9c
ENSE00001854410
chr8:
6360782-6357172
3611
ANGP2_HUMAN
444-496
53
4
A:444-495
B:444-495
C:444-495
D:444-495
52
52
52
52
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1z3ua_ (A:)
1b: SCOP_d1z3ub_ (B:)
1c: SCOP_d1z3uc_ (C:)
1d: SCOP_d1z3ud_ (D:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Fibrinogen C-terminal domain-like
(70)
Superfamily
:
Fibrinogen C-terminal domain-like
(70)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d1z3ua_
A:
1b
d1z3ub_
B:
1c
d1z3uc_
C:
1d
d1z3ud_
D:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1z3uA01 (A:280-410,A:486-495)
1b: CATH_1z3uB01 (B:280-410,B:486-495)
1c: CATH_1z3uC01 (C:280-410,C:486-495)
1d: CATH_1z3uD01 (D:280-410,D:486-495)
2a: CATH_1z3uA02 (A:411-485)
2b: CATH_1z3uB02 (B:411-485)
2c: CATH_1z3uC02 (C:411-485)
2d: CATH_1z3uD02 (D:411-485)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Gamma Fibrinogen; Chain A, domain 1
(58)
Homologous Superfamily
:
Gamma Fibrinogen, chain A, domain 1
(58)
Human (Homo sapiens)
(53)
1a
1z3uA01
A:280-410,A:486-495
1b
1z3uB01
B:280-410,B:486-495
1c
1z3uC01
C:280-410,C:486-495
1d
1z3uD01
D:280-410,D:486-495
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2
(58)
Homologous Superfamily
:
Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
(58)
Human (Homo sapiens)
(53)
2a
1z3uA02
A:411-485
2b
1z3uB02
B:411-485
2c
1z3uC02
C:411-485
2d
1z3uD02
D:411-485
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Fibrinogen_C_1z3uD01 (D:281-494)
1b: PFAM_Fibrinogen_C_1z3uD02 (D:281-494)
1c: PFAM_Fibrinogen_C_1z3uD03 (D:281-494)
1d: PFAM_Fibrinogen_C_1z3uD04 (D:281-494)
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Clan
:
Fibrinogen_C
(23)
Family
:
Fibrinogen_C
(23)
Homo sapiens (Human)
(19)
1a
Fibrinogen_C-1z3uD01
D:281-494
1b
Fibrinogen_C-1z3uD02
D:281-494
1c
Fibrinogen_C-1z3uD03
D:281-494
1d
Fibrinogen_C-1z3uD04
D:281-494
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