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1Z2L
Asym. Unit
Info
Asym.Unit (139 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALLANTOATE-AMIDOHYDROLASE FROM E.COLI K12 IN COMPLEX WITH SUBSTRATE ALLANTOATE
Authors
:
R. Agarwal, S. Swaminathan, S. K. Burley, New York Sgx Research Cen Structural Genomics (Nysgxrc)
Date
:
08 Mar 05 (Deposition) - 22 Mar 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Allantoate-Amidohydrolase, Allantoate, Allc, Purine Catabolism, Allantoin Utilization, T1507, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Hydrolase
(Keyword Search:
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Reference
:
R. Agarwal, S. K. Burley, S. Swaminathan
Structural Analysis Of A Ternary Complex Of Allantoate Amidohydrolase From Escherichia Coli Reveals Its Mechanics.
J. Mol. Biol. V. 368 450 2007
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: ALLANTOATE ION (1ALa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1AL
1
Ligand/Ion
ALLANTOATE ION
2
SO4
2
Ligand/Ion
SULFATE ION
3
ZN
4
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:83 , ASP A:94 , HIS A:192 , ZN A:512 , HOH A:629 , HOH A:631
BINDING SITE FOR RESIDUE ZN A 511
2
AC2
SOFTWARE
ASP A:94 , GLU A:129 , HIS A:384 , ZN A:511 , HOH A:631
BINDING SITE FOR RESIDUE ZN A 512
3
AC3
SOFTWARE
HIS B:83 , ASP B:94 , HIS B:192 , ZN B:514 , HOH B:590 , HOH B:591
BINDING SITE FOR RESIDUE ZN B 513
4
AC4
SOFTWARE
ASP B:94 , GLU B:129 , GLN B:195 , HIS B:384 , ZN B:513 , HOH B:591
BINDING SITE FOR RESIDUE ZN B 514
5
AC5
SOFTWARE
GLN A:215 , ARG A:217 , ARG A:290 , ALA A:358 , GLY A:359 , HIS B:228 , 1AL B:516
BINDING SITE FOR RESIDUE SO4 A 513
6
AC6
SOFTWARE
GLN B:215 , ARG B:217 , ARG B:290 , ALA B:358 , GLY B:359 , HOH B:534
BINDING SITE FOR RESIDUE SO4 B 515
7
AC7
SOFTWARE
ARG A:217 , ARG A:290 , HIS A:384 , SO4 A:513 , HIS B:228 , ASN B:277 , VAL B:278 , HOH B:552
BINDING SITE FOR RESIDUE 1AL B 516
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1z2la2 (A:213-329)
1b: SCOP_d1z2lb2 (B:213-329)
2a: SCOP_d1z2la1 (A:4-212,A:330-413)
2b: SCOP_d1z2lb1 (B:3-212,B:330-412)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Bacterial exopeptidase dimerisation domain
(12)
Family
:
Bacterial exopeptidase dimerisation domain
(12)
Protein domain
:
Allantoate amidohydrolase AllC
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1z2la2
A:213-329
1b
d1z2lb2
B:213-329
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Bacterial dinuclear zinc exopeptidases
(55)
Protein domain
:
Allantoate amidohydrolase AllC catalytic domain
(2)
Escherichia coli [TaxId: 562]
(2)
2a
d1z2la1
A:4-212,A:330-413
2b
d1z2lb1
B:3-212,B:330-412
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1z2lA02 (A:214-328)
1b: CATH_1z2lB02 (B:214-328)
2a: CATH_1z2lB01 (B:3-213,B:329-412)
2b: CATH_1z2lA01 (A:3-213,A:329-413)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.360, no name defined]
(23)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(2)
1a
1z2lA02
A:214-328
1b
1z2lB02
B:214-328
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(2)
2a
1z2lB01
B:3-213,B:329-412
2b
1z2lA01
A:3-213,A:329-413
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M20_1z2lB01 (B:79-408)
1b: PFAM_Peptidase_M20_1z2lB02 (B:79-408)
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Clan
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Peptidase_MH
(119)
Family
:
Peptidase_M20
(17)
Escherichia coli (strain K12)
(2)
1a
Peptidase_M20-1z2lB01
B:79-408
1b
Peptidase_M20-1z2lB02
B:79-408
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Asymmetric Unit 1
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Asym.Unit (139 KB)
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