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1Z2C
Biol. Unit 1
Info
Asym.Unit (362 KB)
Biol.Unit 1 (358 KB)
Biol.Unit 2 (351 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MDIA1 GBD-FH3 IN COMPLEX WITH RHOC-GMPPNP
Authors
:
R. Rose, M. Weyand, M. Lammers, T. Ishizaki, M. R. Ahmadian, A. Wittinghofer
Date
:
08 Mar 05 (Deposition) - 10 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D (2x)
Keywords
:
Armadillo Repeat, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Rose, M. Weyand, M. Lammers, T. Ishizaki, M. R. Ahmadian, A. Wittinghofer
Structural And Mechanistic Insights Into The Interaction Between Rho And Mammalian Dia.
Nature V. 435 513 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GNP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:19 , THR A:37 , GNP A:195
BINDING SITE FOR RESIDUE MG A 194
2
AC3
SOFTWARE
GLY A:14 , ALA A:15 , CYS A:16 , GLY A:17 , LYS A:18 , THR A:19 , CYS A:20 , PHE A:30 , PRO A:31 , TYR A:34 , PRO A:36 , THR A:37 , THR A:60 , GLY A:62 , LYS A:118 , ASP A:120 , LEU A:121 , SER A:160 , ALA A:161 , LYS A:162 , MG A:194
BINDING SITE FOR RESIDUE GNP A 195
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051974 (D120H, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051974
D
120
H
RHOC_HUMAN
Polymorphism
11538959
A
D
120
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RHO (A:1-178)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RHOC_HUMAN
1-178
2
A:1-178
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1z2cb1 (B:83-443)
1b: SCOP_d1z2cd_ (D:)
2a: SCOP_d1z2ca1 (A:1-179)
2b: SCOP_d1z2cc_ (C:)
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(
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Diap1 N-terninal region-like
(5)
Protein domain
:
Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
1a
d1z2cb1
B:83-443
1b
d1z2cd_
D:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
RhoC
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1z2ca1
A:1-179
2b
d1z2cc_
C:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1z2cA00 (A:1-179)
1b: CATH_1z2cC00 (C:1-179)
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Organisms
(
)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1z2cA00
A:1-179
1b
1z2cC00
C:1-179
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Ras_1z2cC01 (C:7-179)
1b: PFAM_Ras_1z2cC02 (C:7-179)
2a: PFAM_Drf_FH3_1z2cD01 (D:265-436)
2b: PFAM_Drf_FH3_1z2cD02 (D:265-436)
3a: PFAM_Drf_GBD_1z2cD03 (D:83-259)
3b: PFAM_Drf_GBD_1z2cD04 (D:83-259)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1z2cC01
C:7-179
1b
Ras-1z2cC02
C:7-179
Clan
:
TPR
(230)
Family
:
Drf_FH3
(3)
Mus musculus (Mouse)
(3)
2a
Drf_FH3-1z2cD01
D:265-436
2b
Drf_FH3-1z2cD02
D:265-436
Family
:
Drf_GBD
(3)
Mus musculus (Mouse)
(3)
3a
Drf_GBD-1z2cD03
D:83-259
3b
Drf_GBD-1z2cD04
D:83-259
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Show PDB file:
Asym.Unit (362 KB)
Header - Asym.Unit
Biol.Unit 1 (358 KB)
Header - Biol.Unit 1
Biol.Unit 2 (351 KB)
Header - Biol.Unit 2
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