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1Z0F
Asym. Unit
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Asym.Unit (33 KB)
Biol.Unit 1 (28 KB)
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(1)
Title
:
GDP-BOUND RAB14 GTPASE
Authors
:
S. Eathiraj, X. Pan, C. Ritacco, D. G. Lambright
Date
:
01 Mar 05 (Deposition) - 26 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Rab Gtpase, Rab14, Vesicular Trafficking, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Eathiraj, X. Pan, C. Ritacco, D. G. Lambright
Structural Basis Of Family-Wide Rab Gtpase Recognition By Rabenosyn-5.
Nature V. 436 415 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:25 , ASP A:66 , GDP A:200 , HOH A:205 , HOH A:240 , HOH A:247 , HOH A:257
BINDING SITE FOR RESIDUE MG A 201
2
AC2
SOFTWARE
GLY A:21 , VAL A:22 , GLY A:23 , LYS A:24 , SER A:25 , CYS A:26 , PHE A:36 , ASP A:66 , ASN A:124 , LYS A:125 , ASP A:127 , LEU A:128 , SER A:154 , ALA A:155 , LYS A:156 , MG A:201 , HOH A:205 , HOH A:252 , HOH A:253 , HOH A:268
BINDING SITE FOR RESIDUE GDP A 200
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RAB (A:7-173)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAB
PS51419
small GTPase Rab1 family profile.
RAB14_HUMAN
7-213
1
A:7-173
[
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Exons
(7, 7)
Info
All Exons
Exon 1.4 (A:7-18)
Exon 1.5 (A:18-36)
Exon 1.6 (A:36-95)
Exon 1.7 (A:95-117)
Exon 1.8 (A:118-147)
Exon 1.9 (A:147-157)
Exon 1.10b (A:157-173)
View:
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10b
8: Boundary 1.10b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000373840
3
ENSE00001461729
chr9:
123964147-123963917
231
RAB14_HUMAN
-
0
0
-
-
1.4
ENST00000373840
4
ENSE00001461727
chr9:
123955697-123955639
59
RAB14_HUMAN
1-18
18
1
A:7-18
12
1.5
ENST00000373840
5
ENSE00000806482
chr9:
123954502-123954449
54
RAB14_HUMAN
18-36
19
1
A:18-36
19
1.6
ENST00000373840
6
ENSE00000806478
chr9:
123953009-123952832
178
RAB14_HUMAN
36-95
60
1
A:36-95
60
1.7
ENST00000373840
7
ENSE00000724454
chr9:
123949297-123949231
67
RAB14_HUMAN
95-117
23
1
A:95-117
23
1.8
ENST00000373840
8
ENSE00000724453
chr9:
123945676-123945589
88
RAB14_HUMAN
118-147
30
1
A:118-147
30
1.9
ENST00000373840
9
ENSE00000724451
chr9:
123945238-123945208
31
RAB14_HUMAN
147-157
11
1
A:147-157
11
1.10b
ENST00000373840
10b
ENSE00001461714
chr9:
123943851-123940415
3437
RAB14_HUMAN
157-215
59
1
A:157-173
17
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1z0fa_ (A:)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d1z0fa_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Ras_1z0fA01 (A:13-173)
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Clans
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(
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(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1z0fA01
A:13-173
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Asymmetric Unit 1
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