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1Z03
Biol. Unit 3
Info
Asym.Unit (498 KB)
Biol.Unit 1 (249 KB)
Biol.Unit 2 (250 KB)
Biol.Unit 3 (490 KB)
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(1)
Title
:
2-OXOQUINOLINE 8-MONOOXYGENASE COMPONENT: ACTIVE SITE MODULATION BY RIESKE-[2FE-2S] CENTER OXIDATION/REDUCTION
Authors
:
B. M. Martins, T. Svetlitchnaia, H. Dobbek
Date
:
01 Mar 05 (Deposition) - 24 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: A,B,C,D,E,F (1x)
Keywords
:
Monooxygenase, Rieske Center, Oxygen Binding/Activation, Substrate Bound Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. M. Martins, T. Svetlitchnaia, H. Dobbek
2-Oxoquinoline 8-Monooxygenase Oxygenase Component: Active Site Modulation By Rieske-[2Fe-2S] Center Oxidation/Reduction
Structure V. 13 817 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2b: FE2/S2 (INORGANIC) CLUSTER (FESb)
2c: FE2/S2 (INORGANIC) CLUSTER (FESc)
2d: FE2/S2 (INORGANIC) CLUSTER (FESd)
2e: FE2/S2 (INORGANIC) CLUSTER (FESe)
2f: FE2/S2 (INORGANIC) CLUSTER (FESf)
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
1e: FE (III) ION (FEe)
1f: FE (III) ION (FEf)
3a: QUINOLIN-2(1H)-ONE (OCHa)
3b: QUINOLIN-2(1H)-ONE (OCHb)
3c: QUINOLIN-2(1H)-ONE (OCHc)
3d: QUINOLIN-2(1H)-ONE (OCHd)
3e: QUINOLIN-2(1H)-ONE (OCHe)
3f: QUINOLIN-2(1H)-ONE (OCHf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
FES
3
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
3
OCH
3
Ligand/Ion
QUINOLIN-2(1H)-ONE
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:221 , HIS A:225 , ASP A:365 , HOH A:5232
BINDING SITE FOR RESIDUE FE A 501
02
AC2
SOFTWARE
HIS B:221 , HIS B:225 , ASP B:365 , HOH B:5212
BINDING SITE FOR RESIDUE FE B 501
03
AC3
SOFTWARE
HIS C:221 , HIS C:225 , ASP C:365 , HOH C:5192
BINDING SITE FOR RESIDUE FE C 501
04
AC4
SOFTWARE
HIS D:221 , HIS D:225 , ASP D:365 , HOH D:5241
BINDING SITE FOR RESIDUE FE D 501
05
AC5
SOFTWARE
HIS E:221 , HIS E:225 , ASP E:365 , HOH E:5166
BINDING SITE FOR RESIDUE FE E 501
06
AC6
SOFTWARE
HIS F:221 , HIS F:225 , ASP F:365 , HOH F:5205
BINDING SITE FOR RESIDUE FE F 501
07
AC7
SOFTWARE
CYS A:84 , HIS A:86 , ARG A:87 , CYS A:105 , HIS A:108 , PHE A:110
BINDING SITE FOR RESIDUE FES A 500
08
AC8
SOFTWARE
GLY A:216 , TYR A:292 , LEU A:302 , VAL A:304 , TRP A:307 , GLN A:314 , PHE A:361 , HOH A:4676 , HOH A:4754 , HOH A:5232
BINDING SITE FOR RESIDUE OCH A 4600
09
AC9
SOFTWARE
CYS B:84 , HIS B:86 , ARG B:87 , CYS B:105 , HIS B:108 , GLY B:109 , PHE B:110
BINDING SITE FOR RESIDUE FES B 500
10
BC1
SOFTWARE
GLY B:216 , TYR B:292 , LEU B:302 , VAL B:304 , TRP B:307 , GLN B:314 , PHE B:361 , HOH B:4679 , HOH B:4768 , HOH B:5212
BINDING SITE FOR RESIDUE OCH B 4601
11
BC2
SOFTWARE
CYS C:84 , HIS C:86 , ARG C:87 , CYS C:105 , HIS C:108 , GLY C:109 , PHE C:110
BINDING SITE FOR RESIDUE FES C 500
12
BC3
SOFTWARE
GLY C:216 , TYR C:292 , LEU C:302 , VAL C:304 , TRP C:307 , GLN C:314 , PHE C:361 , HOH C:4730 , HOH C:4735 , HOH C:5192
BINDING SITE FOR RESIDUE OCH C 4602
13
BC4
SOFTWARE
CYS D:84 , HIS D:86 , ARG D:87 , CYS D:105 , HIS D:108 , GLY D:109 , PHE D:110
BINDING SITE FOR RESIDUE FES D 500
14
BC5
SOFTWARE
GLY D:216 , TYR D:292 , LEU D:302 , VAL D:304 , TRP D:307 , GLN D:314 , PHE D:361 , HOH D:4702 , HOH D:4709
BINDING SITE FOR RESIDUE OCH D 4603
15
BC6
SOFTWARE
CYS E:84 , HIS E:86 , ARG E:87 , CYS E:105 , HIS E:108 , GLY E:109 , PHE E:110
BINDING SITE FOR RESIDUE FES E 500
16
BC7
SOFTWARE
GLY E:216 , TYR E:292 , LEU E:302 , VAL E:304 , TRP E:307 , GLN E:314 , PHE E:361 , HOH E:4663 , HOH E:4709
BINDING SITE FOR RESIDUE OCH E 4604
17
BC8
SOFTWARE
CYS F:84 , HIS F:86 , ARG F:87 , CYS F:105 , HIS F:108 , GLY F:109 , PHE F:110
BINDING SITE FOR RESIDUE FES F 500
18
BC9
SOFTWARE
GLY F:216 , TYR F:292 , LEU F:302 , VAL F:304 , TRP F:307 , GLN F:314 , PHE F:361 , HOH F:4721 , HOH F:4779 , HOH F:5205
BINDING SITE FOR RESIDUE OCH F 4605
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1z03a1 (A:16-163)
1b: SCOP_d1z03e1 (E:16-163)
1c: SCOP_d1z03f1 (F:16-163)
1d: SCOP_d1z03b1 (B:16-163)
1e: SCOP_d1z03c1 (C:16-163)
1f: SCOP_d1z03d1 (D:16-163)
2a: SCOP_d1z03a2 (A:164-442)
2b: SCOP_d1z03e2 (E:164-442)
2c: SCOP_d1z03f2 (F:164-442)
2d: SCOP_d1z03b2 (B:164-442)
2e: SCOP_d1z03c2 (C:164-442)
2f: SCOP_d1z03d2 (D:164-442)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
Ring hydroxylating alpha subunit ISP domain
(40)
Protein domain
:
2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
(3)
Pseudomonas putida [TaxId: 303]
(3)
1a
d1z03a1
A:16-163
1b
d1z03e1
E:16-163
1c
d1z03f1
F:16-163
1d
d1z03b1
B:16-163
1e
d1z03c1
C:16-163
1f
d1z03d1
D:16-163
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
Ring hydroxylating alpha subunit catalytic domain
(42)
Protein domain
:
2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
(3)
Pseudomonas putida [TaxId: 303]
(3)
2a
d1z03a2
A:164-442
2b
d1z03e2
E:164-442
2c
d1z03f2
F:164-442
2d
d1z03b2
B:164-442
2e
d1z03c2
C:164-442
2f
d1z03d2
D:164-442
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Aromatic_hydrox_1z03F01 (F:157-409)
1b: PFAM_Aromatic_hydrox_1z03F02 (F:157-409)
1c: PFAM_Aromatic_hydrox_1z03F03 (F:157-409)
1d: PFAM_Aromatic_hydrox_1z03F04 (F:157-409)
1e: PFAM_Aromatic_hydrox_1z03F05 (F:157-409)
1f: PFAM_Aromatic_hydrox_1z03F06 (F:157-409)
2a: PFAM_Rieske_1z03F07 (F:43-146)
2b: PFAM_Rieske_1z03F08 (F:43-146)
2c: PFAM_Rieske_1z03F09 (F:43-146)
2d: PFAM_Rieske_1z03F10 (F:43-146)
2e: PFAM_Rieske_1z03F11 (F:43-146)
2f: PFAM_Rieske_1z03F12 (F:43-146)
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(
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Organisms
(
)
(
)
Clan
:
Bet_V_1_like
(93)
Family
:
Aromatic_hydrox
(3)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(3)
1a
Aromatic_hydrox-1z03F01
F:157-409
1b
Aromatic_hydrox-1z03F02
F:157-409
1c
Aromatic_hydrox-1z03F03
F:157-409
1d
Aromatic_hydrox-1z03F04
F:157-409
1e
Aromatic_hydrox-1z03F05
F:157-409
1f
Aromatic_hydrox-1z03F06
F:157-409
Clan
:
ISP-domain
(54)
Family
:
Rieske
(53)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(13)
2a
Rieske-1z03F07
F:43-146
2b
Rieske-1z03F08
F:43-146
2c
Rieske-1z03F09
F:43-146
2d
Rieske-1z03F10
F:43-146
2e
Rieske-1z03F11
F:43-146
2f
Rieske-1z03F12
F:43-146
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