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1Z02
Biol. Unit 2
Info
Asym.Unit (526 KB)
Biol.Unit 1 (261 KB)
Biol.Unit 2 (264 KB)
Biol.Unit 3 (517 KB)
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(1)
Title
:
2-OXOQUINOLINE 8-MONOOXYGENASE COMPONENT: ACTIVE SITE MODULATION BY RIESKE-[2FE-2S] CENTER OXIDATION/REDUCTION
Authors
:
B. M. Martins, T. Svetlitchnaia, H. Dobbek
Date
:
01 Mar 05 (Deposition) - 24 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: A,B,C,D,E,F (1x)
Keywords
:
Monooxygenase, Rieske Center, Oxygen Binding/Activation, Substrate Bound Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
B. M. Martins, T. Svetlitchnaia, H. Dobbek
2-Oxoquinoline 8-Monooxygenase Oxygenase Component: Active Site Modulation By Rieske-[2Fe-2S] Center Oxidation/Reduction
Structure V. 13 817 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2b: FE2/S2 (INORGANIC) CLUSTER (FESb)
2c: FE2/S2 (INORGANIC) CLUSTER (FESc)
2d: FE2/S2 (INORGANIC) CLUSTER (FESd)
2e: FE2/S2 (INORGANIC) CLUSTER (FESe)
2f: FE2/S2 (INORGANIC) CLUSTER (FESf)
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
1e: FE (III) ION (FEe)
1f: FE (III) ION (FEf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
FES
3
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
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Sites
(6, 6)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
HIS D:221 , HIS D:225 , ASP D:365 , HOH D:1317 , HOH D:1318
BINDING SITE FOR RESIDUE FE D 501
2
AC5
SOFTWARE
HIS E:221 , HIS E:225 , ASP E:365 , HOH E:1374 , HOH E:1375
BINDING SITE FOR RESIDUE FE E 501
3
AC6
SOFTWARE
HIS F:221 , HIS F:225 , ASP F:365 , HOH F:1372 , HOH F:1373
BINDING SITE FOR RESIDUE FE F 501
4
BC1
SOFTWARE
CYS D:84 , HIS D:86 , ARG D:87 , VAL D:89 , CYS D:105 , HIS D:108 , GLY D:109 , PHE D:110
BINDING SITE FOR RESIDUE FES D 500
5
BC2
SOFTWARE
CYS E:84 , HIS E:86 , ARG E:87 , VAL E:89 , CYS E:105 , HIS E:108 , GLY E:109 , PHE E:110
BINDING SITE FOR RESIDUE FES E 500
6
BC3
SOFTWARE
CYS F:84 , HIS F:86 , ARG F:87 , VAL F:89 , CYS F:105 , HIS F:108 , GLY F:109 , PHE F:110
BINDING SITE FOR RESIDUE FES F 500
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1z02a1 (A:16-163)
1b: SCOP_d1z02b1 (B:16-163)
1c: SCOP_d1z02c1 (C:16-163)
1d: SCOP_d1z02d1 (D:16-163)
1e: SCOP_d1z02e1 (E:16-163)
1f: SCOP_d1z02f1 (F:16-163)
2a: SCOP_d1z02a2 (A:164-442)
2b: SCOP_d1z02b2 (B:164-442)
2c: SCOP_d1z02c2 (C:164-442)
2d: SCOP_d1z02d2 (D:164-442)
2e: SCOP_d1z02e2 (E:164-442)
2f: SCOP_d1z02f2 (F:164-442)
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
Ring hydroxylating alpha subunit ISP domain
(40)
Protein domain
:
2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
(3)
Pseudomonas putida [TaxId: 303]
(3)
1a
d1z02a1
A:16-163
1b
d1z02b1
B:16-163
1c
d1z02c1
C:16-163
1d
d1z02d1
D:16-163
1e
d1z02e1
E:16-163
1f
d1z02f1
F:16-163
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
Ring hydroxylating alpha subunit catalytic domain
(42)
Protein domain
:
2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
(3)
Pseudomonas putida [TaxId: 303]
(3)
2a
d1z02a2
A:164-442
2b
d1z02b2
B:164-442
2c
d1z02c2
C:164-442
2d
d1z02d2
D:164-442
2e
d1z02e2
E:164-442
2f
d1z02f2
F:164-442
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Aromatic_hydrox_1z02F01 (F:157-409)
1b: PFAM_Aromatic_hydrox_1z02F02 (F:157-409)
1c: PFAM_Aromatic_hydrox_1z02F03 (F:157-409)
1d: PFAM_Aromatic_hydrox_1z02F04 (F:157-409)
1e: PFAM_Aromatic_hydrox_1z02F05 (F:157-409)
1f: PFAM_Aromatic_hydrox_1z02F06 (F:157-409)
2a: PFAM_Rieske_1z02F07 (F:43-146)
2b: PFAM_Rieske_1z02F08 (F:43-146)
2c: PFAM_Rieske_1z02F09 (F:43-146)
2d: PFAM_Rieske_1z02F10 (F:43-146)
2e: PFAM_Rieske_1z02F11 (F:43-146)
2f: PFAM_Rieske_1z02F12 (F:43-146)
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Clan
:
Bet_V_1_like
(93)
Family
:
Aromatic_hydrox
(3)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(3)
1a
Aromatic_hydrox-1z02F01
F:157-409
1b
Aromatic_hydrox-1z02F02
F:157-409
1c
Aromatic_hydrox-1z02F03
F:157-409
1d
Aromatic_hydrox-1z02F04
F:157-409
1e
Aromatic_hydrox-1z02F05
F:157-409
1f
Aromatic_hydrox-1z02F06
F:157-409
Clan
:
ISP-domain
(54)
Family
:
Rieske
(53)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(13)
2a
Rieske-1z02F07
F:43-146
2b
Rieske-1z02F08
F:43-146
2c
Rieske-1z02F09
F:43-146
2d
Rieske-1z02F10
F:43-146
2e
Rieske-1z02F11
F:43-146
2f
Rieske-1z02F12
F:43-146
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Asymmetric Unit 1
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Asym.Unit (526 KB)
Header - Asym.Unit
Biol.Unit 1 (261 KB)
Header - Biol.Unit 1
Biol.Unit 2 (264 KB)
Header - Biol.Unit 2
Biol.Unit 3 (517 KB)
Header - Biol.Unit 3
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