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Asym. Unit
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Asym.Unit (870 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF ERCC1 COMPLEXED WITH THE C-TERMINAL DOMAIN OF XPF
Authors
:
K. Tripsianes, G. Folkers, E. Ab, D. Das, H. Odijk, N. G. J. Jaspers, J. H. J. Hoeijmakers, R. Kaptein, R. Boelens
Date
:
01 Mar 05 (Deposition) - 20 Dec 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Helix-Hairpin-Helix, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tripsianes, G. Folkers, E. Ab, D. Das, H. Odijk, N. G. J. Jaspers, J. H. J. Hoeijmakers, R. Kaptein, R. Boelens
The Structure Of The Human Ercc1/Xpf Interaction Domains Reveals A Complementary Role For The Two Proteins In Nucleotide Excision Repair
Structure V. 13 1849 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_032776 (F231L, chain A, )
2: VAR_019167 (A266T, chain A, )
3: VAR_057479 (A849D, chain B, )
4: VAR_019201 (I862V, chain B, )
5: VAR_013408 (E864G, chain B, )
6: VAR_014772 (G901E, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032776
F
231
L
ERCC1_HUMAN
Disease (COFS4)
---
A
F
231
L
2
UniProt
VAR_019167
A
266
T
ERCC1_HUMAN
Polymorphism
3212977
A
A
266
T
3
UniProt
VAR_057479
A
860
D
XPF_HUMAN
Polymorphism
4986933
B
A
849
D
4
UniProt
VAR_019201
I
873
V
XPF_HUMAN
Polymorphism
2020957
B
I
862
V
5
UniProt
VAR_013408
E
875
G
XPF_HUMAN
Polymorphism
1800124
B
E
864
G
6
UniProt
VAR_014772
G
912
E
XPF_HUMAN
Polymorphism
2020956
B
G
901
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(5, 5)
Info
All Exons
Exon 1.7 (A:219-234)
Exon 1.8 (A:235-258)
Exon 1.9a (A:259-281)
Exon 1.10b (A:282-297)
Exon 2.13c (B:822-905)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9a
4: Boundary 1.9a/1.10b
5: Boundary 1.10b/-
6: Boundary 2.12/2.13c
7: Boundary 2.13c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000300853
1a
ENSE00001048737
chr19:
45927177-45927039
139
ERCC1_HUMAN
-
0
0
-
-
1.2b
ENST00000300853
2b
ENSE00001270910
chr19:
45926639-45926528
112
ERCC1_HUMAN
1-35
35
0
-
-
1.3
ENST00000300853
3
ENSE00000749056
chr19:
45924651-45924436
216
ERCC1_HUMAN
36-107
72
0
-
-
1.4
ENST00000300853
4
ENSE00000749055
chr19:
45923685-45923582
104
ERCC1_HUMAN
108-142
35
0
-
-
1.5
ENST00000300853
5
ENSE00000749054
chr19:
45922455-45922356
100
ERCC1_HUMAN
142-175
34
0
-
-
1.6
ENST00000300853
6
ENSE00000749053
chr19:
45920155-45920079
77
ERCC1_HUMAN
176-201
26
0
-
-
1.7
ENST00000300853
7
ENSE00000749052
chr19:
45918218-45918119
100
ERCC1_HUMAN
201-234
34
1
A:219-234
16
1.8
ENST00000300853
8
ENSE00000749051
chr19:
45917292-45917221
72
ERCC1_HUMAN
235-258
24
1
A:235-258
24
1.9a
ENST00000300853
9a
ENSE00000469632
chr19:
45917003-45916935
69
ERCC1_HUMAN
259-281
23
1
A:259-281
23
1.10b
ENST00000300853
10b
ENSE00001270905
chr19:
45912983-45912872
112
ERCC1_HUMAN
282-297
16
1
A:282-297
16
2.1a
ENST00000311895
1a
ENSE00001307513
chr16:
14014014-14014229
216
XPF_HUMAN
1-69
69
0
-
-
2.2
ENST00000311895
2
ENSE00001203019
chr16:
14015888-14016068
181
XPF_HUMAN
70-130
61
0
-
-
2.3
ENST00000311895
3
ENSE00001203014
chr16:
14020418-14020613
196
XPF_HUMAN
130-195
66
0
-
-
2.4
ENST00000311895
4
ENSE00001203009
chr16:
14021885-14022092
208
XPF_HUMAN
195-264
70
0
-
-
2.5
ENST00000311895
5
ENSE00001203003
chr16:
14024567-14024747
181
XPF_HUMAN
265-325
61
0
-
-
2.6b
ENST00000311895
6b
ENSE00001202996
chr16:
14026014-14026142
129
XPF_HUMAN
325-368
44
0
-
-
2.8
ENST00000311895
8
ENSE00001202989
chr16:
14028049-14028159
111
XPF_HUMAN
368-405
38
0
-
-
2.9a
ENST00000311895
9a
ENSE00001504946
chr16:
14029003-14029600
598
XPF_HUMAN
405-604
200
0
-
-
2.10b
ENST00000311895
10b
ENSE00001202976
chr16:
14031623-14031715
93
XPF_HUMAN
604-635
32
0
-
-
2.12
ENST00000311895
12
ENSE00001202971
chr16:
14038580-14038692
113
XPF_HUMAN
635-673
39
0
-
-
2.13c
ENST00000311895
13c
ENSE00001203025
chr16:
14041471-14046205
4735
XPF_HUMAN
673-916
244
1
B:822-905
84
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1z00a1 (A:220-297)
2a: SCOP_d1z00b1 (B:823-905)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
RuvA domain 2-like
(26)
Family
:
Hef domain-like
(9)
Protein domain
:
DNA excision repair protein ERCC-1
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1z00a1
A:220-297
Protein domain
:
DNA repair endonuclease XPF
(5)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1z00b1
B:823-905
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_HHH_1z00A01 (A:259-288)
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Organisms
(
)
(
)
Clan
:
HHH
(112)
Family
:
HHH
(16)
Homo sapiens (Human)
(1)
1a
HHH-1z00A01
A:259-288
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