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Asym. Unit
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Asym.Unit (80 KB)
Biol.Unit 1 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN KAPPA CLASS GLUTATHIONE TRANSFERASE
Authors
:
J. Li, Z. Xia, J. Ding
Date
:
28 Feb 05 (Deposition) - 15 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Glutathione Sulfinate, Peroxidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Li, Z. Xia, J. Ding
Thioredoxin-Like Domain Of Human Kappa Class Glutathione Transferase Reveals Sequence Homology And Structure Similarity To The Theta Class Enzyme
Protein Sci. V. 14 2361 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: L-GAMMA-GLUTAMYL-3-SULFINO-L-ALANY... (GSFa)
1b: L-GAMMA-GLUTAMYL-3-SULFINO-L-ALANY... (GSFb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GSF
2
Ligand/Ion
L-GAMMA-GLUTAMYL-3-SULFINO-L-ALANYLGLYCINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:16 , PRO A:17 , TYR A:18 , ILE A:44 , MET A:48 , ASN A:53 , GLY A:182 , LEU A:183 , PHE A:198 , GLY A:199 , SER A:200 , ASP A:201 , HOH A:401 , HOH A:402 , HOH A:495 , HOH A:522 , LYS B:62 , ARG B:202
BINDING SITE FOR RESIDUE GSF A 301
2
AC2
SOFTWARE
LYS A:62 , ARG A:202 , SER B:16 , PRO B:17 , TYR B:18 , ILE B:44 , MET B:48 , ASN B:53 , MET B:91 , GLY B:182 , LEU B:183 , PHE B:198 , GLY B:199 , SER B:200 , ASP B:201 , HOH B:447 , HOH B:456 , HOH B:494 , HOH B:517 , HOH B:562
BINDING SITE FOR RESIDUE GSF B 1301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
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Exons
(8, 16)
Info
All Exons
Exon 1.3c (A:4-24 | B:4-24)
Exon 1.3i (A:25-52 | B:25-52)
Exon 1.3k (A:52-95 | B:52-95)
Exon 1.3n (A:95-128 | B:95-128)
Exon 1.3p (A:129-140 | B:129-140)
Exon 1.4 (A:141-179 | B:141-179)
Exon 1.5 (A:180-211 | B:180-211)
Exon 1.6e (A:211-221 | B:211-221)
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All Exon Boundaries
1: Boundary -/1.3c
2: Boundary 1.3c/1.3i
3: Boundary 1.3i/1.3k
4: Boundary 1.3k/1.3n
5: Boundary 1.3n/1.3p
6: Boundary 1.3p/1.4
7: Boundary 1.4/1.5
8: Boundary 1.5/1.6e
9: Boundary 1.6e/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000358406
3c
ENSE00001893107
chr7:
142960536-142960678
143
GSTK1_HUMAN
1-24
24
2
A:4-24
B:4-24
21
21
1.3i
ENST00000358406
3i
ENSE00002108841
chr7:
142961179-142961260
82
GSTK1_HUMAN
25-52
28
2
A:25-52
B:25-52
28
28
1.3k
ENST00000358406
3k
ENSE00002119390
chr7:
142961641-142961769
129
GSTK1_HUMAN
52-95
44
2
A:52-95
B:52-95
44
44
1.3n
ENST00000358406
3n
ENSE00002154510
chr7:
142962085-142962185
101
GSTK1_HUMAN
95-128
34
2
A:95-128
B:95-128
34
34
1.3p
ENST00000358406
3p
ENSE00000728805
chr7:
142962354-142962389
36
GSTK1_HUMAN
129-140
12
2
A:129-140
B:129-140
12
12
1.4
ENST00000358406
4
ENSE00002108718
chr7:
142964710-142964826
117
GSTK1_HUMAN
141-179
39
2
A:141-179
B:141-179
39
39
1.5
ENST00000358406
5
ENSE00002091099
chr7:
142965184-142965277
94
GSTK1_HUMAN
180-211
32
2
A:180-211
B:180-211
32
32
1.6e
ENST00000358406
6e
ENSE00001789738
chr7:
142965881-142966222
342
GSTK1_HUMAN
211-226
16
2
A:211-221
B:211-221
11
11
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1yzxa_ (A:)
1b: SCOP_d1yzxb_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
DsbA-like
(29)
Protein domain
:
automated matches
(10)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1yzxa_
A:
1b
d1yzxb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DSBA_1yzxB01 (B:7-211)
1b: PFAM_DSBA_1yzxB02 (B:7-211)
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Clan
:
Thioredoxin
(367)
Family
:
DSBA
(7)
Homo sapiens (Human)
(1)
1a
DSBA-1yzxB01
B:7-211
1b
DSBA-1yzxB02
B:7-211
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Asymmetric Unit 1
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