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1YZ4
Biol. Unit 1
Info
Asym.Unit (57 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DUSP15
Authors
:
S. J. Kim, S. E. Ryu, D. G. Jeong, T. S. Yoon, J. H. Kim, Y. H. Cho, S. K. Jeong, J. W. Lee, J. H. Son
Date
:
28 Feb 05 (Deposition) - 01 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. S. Yoon, D. G. Jeong, J. H. Kim, Y. H. Cho, J. H. Son, J. W. Lee, S. E. Ryu, S. J. Kim
Crystal Structure Of The Catalytic Domain Of Human Vhy, A Dual-Specificity Protein Phosphatase
Proteins V. 61 694 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
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No.
Name
Count
Type
Full Name
1
BOG
1
Ligand/Ion
B-OCTYLGLUCOSIDE
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:38 , GLU A:39 , PHE A:89 , ARG A:94 , HOH A:218 , VAL B:8 , LEU B:9 , VAL B:103 , ALA B:117
BINDING SITE FOR RESIDUE BOG A 210
2
AC2
SOFTWARE
SER A:88 , PHE A:89 , ALA A:90 , GLY A:91 , ILE A:92 , SER A:93 , ARG A:94 , HOH A:215 , HOH A:218
BINDING SITE FOR RESIDUE SO4 A 211
3
AC4
SOFTWARE
ARG A:52 , ARG A:112 , GLY B:155 , GLU B:156 , SER B:157
BINDING SITE FOR RESIDUE SO4 B 159
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_DUAL (A:8-138)
2: TYR_PHOSPHATASE_2 (A:65-123)
3: TYR_PHOSPHATASE_1 (A:86-96)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_DUAL
PS50054
Dual specificity protein phosphatase family profile.
DUS15_HUMAN
5-135
1
A:8-138
-
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
DUS15_HUMAN
62-120
1
A:65-123
-
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
DUS15_HUMAN
83-93
1
A:86-96
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1yz4a_ (A:)
1b: SCOP_d1yz4b_ (B:)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d1yz4a_
A:
1b
d1yz4b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1yz4B01 (B:5-157)
1b: CATH_1yz4A01 (A:5-156)
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)
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
1yz4B01
B:5-157
1b
1yz4A01
A:5-156
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DSPc_1yz4B01 (B:12-140)
1b: PFAM_DSPc_1yz4B02 (B:12-140)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Phosphatase
(121)
Family
:
DSPc
(22)
Homo sapiens (Human)
(13)
1a
DSPc-1yz4B01
B:12-140
1b
DSPc-1yz4B02
B:12-140
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (57 KB)
Header - Asym.Unit
Biol.Unit 1 (28 KB)
Header - Biol.Unit 1
Biol.Unit 2 (28 KB)
Header - Biol.Unit 2
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