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1YZ4
Asym. Unit
Info
Asym.Unit (57 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DUSP15
Authors
:
S. J. Kim, S. E. Ryu, D. G. Jeong, T. S. Yoon, J. H. Kim, Y. H. Cho, S. K. Jeong, J. W. Lee, J. H. Son
Date
:
28 Feb 05 (Deposition) - 01 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. S. Yoon, D. G. Jeong, J. H. Kim, Y. H. Cho, J. H. Son, J. W. Lee, S. E. Ryu, S. J. Kim
Crystal Structure Of The Catalytic Domain Of Human Vhy, A Dual-Specificity Protein Phosphatase
Proteins V. 61 694 2005
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
1
Ligand/Ion
B-OCTYLGLUCOSIDE
2
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:38 , GLU A:39 , PHE A:89 , ARG A:94 , HOH A:218 , VAL B:8 , LEU B:9 , VAL B:103 , ALA B:117
BINDING SITE FOR RESIDUE BOG A 210
2
AC2
SOFTWARE
SER A:88 , PHE A:89 , ALA A:90 , GLY A:91 , ILE A:92 , SER A:93 , ARG A:94 , HOH A:215 , HOH A:218
BINDING SITE FOR RESIDUE SO4 A 211
3
AC3
SOFTWARE
SER B:88 , PHE B:89 , ALA B:90 , GLY B:91 , ILE B:92 , SER B:93 , ARG B:94
BINDING SITE FOR RESIDUE SO4 B 158
4
AC4
SOFTWARE
ARG A:52 , ARG A:112 , GLY B:155 , GLU B:156 , SER B:157
BINDING SITE FOR RESIDUE SO4 B 159
5
AC5
SOFTWARE
HIS B:38 , GLU B:39 , SER B:40 , ARG B:94
BINDING SITE FOR RESIDUE SO4 B 160
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_DUAL (A:8-138,B:8-138)
2: TYR_PHOSPHATASE_2 (A:65-123,B:65-123)
3: TYR_PHOSPHATASE_1 (A:86-96,B:86-96)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_DUAL
PS50054
Dual specificity protein phosphatase family profile.
DUS15_HUMAN
5-135
2
A:8-138
B:8-138
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
DUS15_HUMAN
62-120
2
A:65-123
B:65-123
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
DUS15_HUMAN
83-93
2
A:86-96
B:86-96
[
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]
Exons
(8, 16)
Info
All Exons
Exon 1.1c (A:1-4 | B:5-7)
Exon 1.2e (A:8-19 | B:8-19)
Exon 1.3 (A:19-46 | B:19-46)
Exon 1.4 (A:47-63 | B:47-63)
Exon 1.6a (A:63-88 | B:63-88)
Exon 1.7b (A:88-145 | B:88-145)
Exon 1.10 (A:146-153 | B:146-153)
Exon 1.12 (A:154-156 | B:154-157)
View:
Select:
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All Exon Boundaries
01: Boundary -/1.1c
02: Boundary 1.1c/1.2e
03: Boundary 1.2e/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.6a
06: Boundary 1.6a/1.7b
07: Boundary 1.7b/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.12
10: Boundary 1.12/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000278979
1c
ENSE00001404816
chr20:
30458467-30458379
89
DUS15_HUMAN
1-4
4
2
A:1-4
B:5-7
4
3
1.2e
ENST00000278979
2e
ENSE00001644526
chr20:
30457400-30457367
34
DUS15_HUMAN
5-16
12
2
A:8-19
B:8-19
12
12
1.3
ENST00000278979
3
ENSE00001738266
chr20:
30454956-30454874
83
DUS15_HUMAN
16-43
28
2
A:19-46
B:19-46
28
28
1.4
ENST00000278979
4
ENSE00001689256
chr20:
30452805-30452756
50
DUS15_HUMAN
44-60
17
2
A:47-63
B:47-63
17
17
1.6a
ENST00000278979
6a
ENSE00001618322
chr20:
30451784-30451710
75
DUS15_HUMAN
60-85
26
2
A:63-88
B:63-88
26
26
1.7b
ENST00000278979
7b
ENSE00001790094
chr20:
30450545-30450374
172
DUS15_HUMAN
85-142
58
2
A:88-145
B:88-145
58
58
1.9
ENST00000278979
9
ENSE00001224518
chr20:
30438479-30438415
65
DUS15_HUMAN
143-164
22
0
-
-
1.10
ENST00000278979
10
ENSE00001224513
chr20:
30437677-30437541
137
DUS15_HUMAN
164-210
47
2
A:146-153
B:146-153
8
8
1.12
ENST00000278979
12
ENSE00000991589
chr20:
30436706-30436609
98
DUS15_HUMAN
210-242
33
2
A:154-156
B:154-157
3
4
1.13
ENST00000278979
13
ENSE00001682152
chr20:
30436368-30435440
929
DUS15_HUMAN
243-295
53
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1yz4a_ (A:)
1b: SCOP_d1yz4b_ (B:)
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Classes
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d1yz4a_
A:
1b
d1yz4b_
B:
[
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]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1yz4B01 (B:5-157)
1b: CATH_1yz4A01 (A:5-156)
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(
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(
)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
1yz4B01
B:5-157
1b
1yz4A01
A:5-156
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DSPc_1yz4B01 (B:12-140)
1b: PFAM_DSPc_1yz4B02 (B:12-140)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Phosphatase
(121)
Family
:
DSPc
(22)
Homo sapiens (Human)
(13)
1a
DSPc-1yz4B01
B:12-140
1b
DSPc-1yz4B02
B:12-140
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Asym.Unit (57 KB)
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