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1YY6
Asym. Unit
Info
Asym.Unit (36 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HAUSP/USP7 COMPLEXED WITH AN EBNA1 PEPTIDE
Authors
:
V. Saridakis, Y. Sheng, F. Sarkari, M. Holowaty, K. Shire, T. Nguyen, R. J. Liao, W. Lee, A. M. Edwards, C. H. Arrowsmith, L. Frappier
Date
:
23 Feb 05 (Deposition) - 05 Apr 05 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Traf-Domain, Peptide Binding Site, Protein Peptide Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Saridakis, Y. Sheng, F. Sarkari, M. N. Holowaty, K. Shire, T. Nguyen R. G. Zhang, J. Liao, W. Lee, A. M. Edwards, C. H. Arrowsmith, L. Frappie
Structure Of The P53 Binding Domain Of Hausp/Usp7 Bound To Epstein-Barr Nuclear Antigen 1 Implications For Ebv-Mediate Immortalization.
Mol. Cell V. 18 25 2005
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Hetero Components
(1, 21)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
1g: SODIUM ION (NAg)
1h: SODIUM ION (NAh)
1i: SODIUM ION (NAi)
1j: SODIUM ION (NAj)
1k: SODIUM ION (NAk)
1l: SODIUM ION (NAl)
1m: SODIUM ION (NAm)
1n: SODIUM ION (NAn)
1o: SODIUM ION (NAo)
1p: SODIUM ION (NAp)
1q: SODIUM ION (NAq)
1r: SODIUM ION (NAr)
1s: SODIUM ION (NAs)
1t: SODIUM ION (NAt)
1u: SODIUM ION (NAu)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
21
Ligand/Ion
SODIUM ION
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:100 , GLN A:120 , ASN A:163 , ASP A:164 , HOH A:2076
BINDING SITE FOR RESIDUE NA A 1001
02
AC2
SOFTWARE
LEU A:86 , SER A:87 , PRO A:88 , SER A:129 , TRP A:130 , SER A:131 , HIS A:201
BINDING SITE FOR RESIDUE NA A 1002
03
AC3
SOFTWARE
SER A:127 , THR A:128 , HOH A:2036 , HOH A:2077
BINDING SITE FOR RESIDUE NA A 1003
04
AC4
SOFTWARE
SER A:87 , LYS A:98 , SER A:131 , NA A:1014
BINDING SITE FOR RESIDUE NA A 1004
05
AC5
SOFTWARE
PRO A:88 , PRO A:89 , NA A:1015 , HOH A:2116 , HOH A:2117
BINDING SITE FOR RESIDUE NA A 1005
06
AC6
SOFTWARE
LEU A:86 , LYS A:98 , GLN A:120 , NA A:1011 , NA A:1014 , NA A:1020 , HOH A:2111
BINDING SITE FOR RESIDUE NA A 1006
07
AC7
SOFTWARE
PRO A:88 , THR A:128 , TRP A:130 , PHE A:159 , HIS A:160
BINDING SITE FOR RESIDUE NA A 1007
08
AC8
SOFTWARE
ASN A:122 , SER A:125 , TRP A:130 , HOH A:2080
BINDING SITE FOR RESIDUE NA A 1008
09
AC9
SOFTWARE
PRO A:96 , ASN A:122 , GLU A:124 , SER A:125 , NA A:1011 , HOH A:2081
BINDING SITE FOR RESIDUE NA A 1009
10
BC1
SOFTWARE
ARG A:77 , ASP A:186 , ASP A:187 , LYS A:188 , HOH A:2104 , HOH A:2121
BINDING SITE FOR RESIDUE NA A 1010
11
BC2
SOFTWARE
PRO A:96 , ALA A:123 , GLU A:124 , NA A:1006 , NA A:1009 , NA A:1020 , HOH A:2186
BINDING SITE FOR RESIDUE NA A 1011
12
BC3
SOFTWARE
ILE A:141 , PHE A:183 , THR A:190 , HOH A:2064
BINDING SITE FOR RESIDUE NA A 1012
13
BC4
SOFTWARE
VAL A:176 , ASP A:178 , LYS A:181 , GLY A:182 , PHE A:183 , ILE A:184
BINDING SITE FOR RESIDUE NA A 1013
14
BC5
SOFTWARE
LEU A:86 , LYS A:98 , LEU A:157 , NA A:1004 , NA A:1006 , NA A:1018 , HOH A:2152 , HOH A:2184
BINDING SITE FOR RESIDUE NA A 1014
15
BC6
SOFTWARE
GLN A:72 , PRO A:88 , NA A:1005 , HOH A:2018
BINDING SITE FOR RESIDUE NA A 1015
16
BC7
SOFTWARE
ARG A:66 , PHE A:91 , HOH A:2051 , HOH A:2085 , HOH A:2142
BINDING SITE FOR RESIDUE NA A 1016
17
BC8
SOFTWARE
CYS A:132 , HIS A:133 , ASP A:198 , ALA A:199 , NA A:1018 , HOH A:2058
BINDING SITE FOR RESIDUE NA A 1017
18
BC9
SOFTWARE
SER A:131 , LEU A:157 , HIS A:201 , NA A:1014 , NA A:1017
BINDING SITE FOR RESIDUE NA A 1018
19
CC1
SOFTWARE
SER A:67 , GLN A:196 , ALA A:197 , HOH A:2007 , HOH A:2149
BINDING SITE FOR RESIDUE NA A 1019
20
CC2
SOFTWARE
PRO A:96 , GLN A:120 , ASN A:122 , ALA A:123 , NA A:1006 , NA A:1011
BINDING SITE FOR RESIDUE NA A 1020
21
CC3
SOFTWARE
PHE A:73 , THR A:74 , HOH A:2018 , HOH A:2077 , HOH A:2133
BINDING SITE FOR RESIDUE NA A 1021
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: MATH (A:68-195)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MATH
PS50144
MATH/TRAF domain profile.
UBP7_HUMAN
68-195
1
A:68-195
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.4 (A:63-128 (gaps))
Exon 1.5 (A:128-174)
Exon 1.6 (A:175-204)
Exon 1.7 (A:204-205)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000344836
1
ENSE00001413420
chr16:
9057341-9057064
278
UBP7_HUMAN
1-27
27
0
-
-
1.3
ENST00000344836
3
ENSE00001363956
chr16:
9024254-9024150
105
UBP7_HUMAN
27-62
36
0
-
-
1.4
ENST00000344836
4
ENSE00001368599
chr16:
9017270-9017072
199
UBP7_HUMAN
62-128
67
1
A:63-128 (gaps)
66
1.5
ENST00000344836
5
ENSE00001378973
chr16:
9015152-9015014
139
UBP7_HUMAN
128-174
47
1
A:128-174
47
1.6
ENST00000344836
6
ENSE00001384498
chr16:
9014304-9014216
89
UBP7_HUMAN
175-204
30
1
A:175-204
30
1.7
ENST00000344836
7
ENSE00001364655
chr16:
9012996-9012888
109
UBP7_HUMAN
204-240
37
1
A:204-205
2
1.8
ENST00000344836
8
ENSE00001371018
chr16:
9011013-9010883
131
UBP7_HUMAN
241-284
44
0
-
-
1.9
ENST00000344836
9
ENSE00001378062
chr16:
9010413-9010359
55
UBP7_HUMAN
284-302
19
0
-
-
1.10
ENST00000344836
10
ENSE00001382791
chr16:
9009382-9009302
81
UBP7_HUMAN
303-329
27
0
-
-
1.11
ENST00000344836
11
ENSE00001382051
chr16:
9009201-9009111
91
UBP7_HUMAN
330-360
31
0
-
-
1.12
ENST00000344836
12
ENSE00001364905
chr16:
9004684-9004602
83
UBP7_HUMAN
360-387
28
0
-
-
1.13
ENST00000344836
13
ENSE00001369206
chr16:
9002307-9002198
110
UBP7_HUMAN
388-424
37
0
-
-
1.14
ENST00000344836
14
ENSE00001370062
chr16:
9000439-9000283
157
UBP7_HUMAN
424-476
53
0
-
-
1.15
ENST00000344836
15
ENSE00001386233
chr16:
8999188-8999044
145
UBP7_HUMAN
477-525
49
0
-
-
1.16
ENST00000344836
16
ENSE00001369997
chr16:
8998422-8998292
131
UBP7_HUMAN
525-568
44
0
-
-
1.17
ENST00000344836
17
ENSE00001373075
chr16:
8997259-8997125
135
UBP7_HUMAN
569-613
45
0
-
-
1.18
ENST00000344836
18
ENSE00001385270
chr16:
8996339-8996238
102
UBP7_HUMAN
614-647
34
0
-
-
1.19
ENST00000344836
19
ENSE00001366300
chr16:
8996044-8995939
106
UBP7_HUMAN
648-683
36
0
-
-
1.20
ENST00000344836
20
ENSE00001403793
chr16:
8995091-8994999
93
UBP7_HUMAN
683-714
32
0
-
-
1.21
ENST00000344836
21
ENSE00001416021
chr16:
8994914-8994847
68
UBP7_HUMAN
714-736
23
0
-
-
1.22
ENST00000344836
22
ENSE00001413036
chr16:
8994487-8994387
101
UBP7_HUMAN
737-770
34
0
-
-
1.23
ENST00000344836
23
ENSE00001425600
chr16:
8993614-8993461
154
UBP7_HUMAN
770-821
52
0
-
-
1.24
ENST00000344836
24
ENSE00001432172
chr16:
8993045-8992978
68
UBP7_HUMAN
822-844
23
0
-
-
1.25
ENST00000344836
25
ENSE00001431013
chr16:
8992496-8992388
109
UBP7_HUMAN
844-880
37
0
-
-
1.26
ENST00000344836
26
ENSE00001407007
chr16:
8992294-8992217
78
UBP7_HUMAN
881-906
26
0
-
-
1.27
ENST00000344836
27
ENSE00001504725
chr16:
8990956-8990856
101
UBP7_HUMAN
907-940
34
0
-
-
1.28
ENST00000344836
28
ENSE00001504724
chr16:
8989598-8989499
100
UBP7_HUMAN
940-973
34
0
-
-
1.29
ENST00000344836
29
ENSE00001423657
chr16:
8989007-8988888
120
UBP7_HUMAN
974-1013
40
0
-
-
1.30
ENST00000344836
30
ENSE00001428927
chr16:
8988712-8988641
72
UBP7_HUMAN
1014-1037
24
0
-
-
1.31
ENST00000344836
31
ENSE00001400057
chr16:
8988497-8988407
91
UBP7_HUMAN
1038-1068
31
0
-
-
1.32b
ENST00000344836
32b
ENSE00001404180
chr16:
8987961-8985951
2011
UBP7_HUMAN
1068-1102
35
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_MATH_1yy6A01 (A:63-197)
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Clan
:
TRAF
(11)
Family
:
MATH
(9)
Homo sapiens (Human)
(9)
1a
MATH-1yy6A01
A:63-197
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