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Asym. Unit
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Asym.Unit (471 KB)
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Models
(20 )
Title
:
NMR STRUCTURE OF VPS4A MIT DOMAIN
Authors
:
J. A. Scott, J. Gaspar, M. Stuchell, S. Alam, J. Skalicky, W. I. Sundquist
Date
:
22 Feb 05 (Deposition) - 06 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Vps4; Mit Domain, Protein Trafficking
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Scott, J. Gaspar, M. Stuchell, S. Alam, J. Skalicky, W. I. Sundquist
Nmr Structure Of Vps4A Mit Domain
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (A:1-7)
Exon 1.2 (A:8-45)
Exon 1.3 (A:45-77)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000254950
1
ENSE00001708382
chr16:
69345279-69345435
157
VPS4A_HUMAN
1-7
7
1
A:1-7
7
1.2
ENST00000254950
2
ENSE00001380891
chr16:
69349911-69350022
112
VPS4A_HUMAN
8-45
38
1
A:8-45
38
1.3
ENST00000254950
3
ENSE00001141242
chr16:
69350128-69350275
148
VPS4A_HUMAN
45-94
50
1
A:45-77
33
1.4
ENST00000254950
4
ENSE00001141235
chr16:
69352553-69352614
62
VPS4A_HUMAN
94-115
22
0
-
-
1.5
ENST00000254950
5
ENSE00001246416
chr16:
69352726-69352845
120
VPS4A_HUMAN
115-155
41
0
-
-
1.6
ENST00000254950
6
ENSE00001141226
chr16:
69353290-69353446
157
VPS4A_HUMAN
155-207
53
0
-
-
1.7
ENST00000254950
7
ENSE00001141220
chr16:
69354044-69354192
149
VPS4A_HUMAN
207-257
51
0
-
-
1.8
ENST00000254950
8
ENSE00001141213
chr16:
69354591-69354672
82
VPS4A_HUMAN
257-284
28
0
-
-
1.9
ENST00000254950
9
ENSE00001141208
chr16:
69354954-69355173
220
VPS4A_HUMAN
284-357
74
0
-
-
1.10
ENST00000254950
10
ENSE00001141200
chr16:
69356463-69356603
141
VPS4A_HUMAN
358-404
47
0
-
-
1.11
ENST00000254950
11
ENSE00001390594
chr16:
69358111-69358951
841
VPS4A_HUMAN
405-437
33
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1yxra1 (A:1-77)
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Class
:
All alpha proteins
(14657)
Fold
:
Spectrin repeat-like
(186)
Superfamily
:
MIT domain
(11)
Family
:
MIT domain
(6)
Protein domain
:
Vacuolar protein sorting factor 4a (VPS4A, SKD2)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1yxra1
A:1-77
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CATH Domains
(0, 0)
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_MIT_1yxrA01 (A:5-74)
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)
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)
Clan
:
no clan defined [family: MIT]
(10)
Family
:
MIT
(10)
Homo sapiens (Human)
(6)
1a
MIT-1yxrA01
A:5-74
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Chain A
Asymmetric Unit 1
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