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1YXK
Asym. Unit
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Asym.Unit (49 KB)
Biol.Unit 1 (45 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN LECTIN-LIKE OXIDIZED LOW-DENSITY LIPOPROTEIN RECEPTOR 1 (LOX-1) DISULFIDE-LINKED DIMER
Authors
:
I. Ohki, T. Ishigaki, T. Oyama, S. Matsunaga, Q. Xie, M. Ohnishi- Kameyama, T. Murata, D. Tsuchiya, S. Machida, K. Morikawa, S. Tate
Date
:
22 Feb 05 (Deposition) - 14 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
C-Type Lectin-Like Domain, Lox-1, Ctld, Scavenger Receptor, Oxidized Ldl Receptor, Nk Cell Receptor, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Ohki, T. Ishigaki, T. Oyama, S. Matsunaga, Q. Xie, M. Ohnishi-Kameyama, T. Murata, D. Tsuchiya, S. Machida, K. Morikawa, S. Tate
Crystal Structure Of Human Lectin-Like, Oxidized Low-Density Lipoprotein Receptor 1 Ligand Binding Domain And Its Ligand Recognition Mode To Oxldl.
Structure V. 13 905 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_023200 (K167N, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023200
K
167
N
OLR1_HUMAN
Polymorphism
11053646
A/B
K
167
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:151-265,B:151-265)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
OLR1_HUMAN
151-265
2
A:151-265
B:151-265
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Exons
(4, 8)
Info
All Exons
Exon 1.3 (A:141-142 | B:136-142)
Exon 1.4 (A:142-188 | B:142-188)
Exon 1.5 (A:189-227 | B:189-227)
Exon 1.6 (A:227-270 | B:227-270)
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000309539
1
ENSE00001209358
chr12:
10324790-10324601
190
OLR1_HUMAN
1-26
26
0
-
-
1.2
ENST00000309539
2
ENSE00001209342
chr12:
10321774-10321673
102
OLR1_HUMAN
26-60
35
0
-
-
1.3
ENST00000309539
3
ENSE00001209334
chr12:
10319556-10319311
246
OLR1_HUMAN
60-142
83
2
A:141-142
B:136-142
2
7
1.4
ENST00000309539
4
ENSE00001209326
chr12:
10313524-10313385
140
OLR1_HUMAN
142-188
47
2
A:142-188
B:142-188
47
47
1.5
ENST00000309539
5
ENSE00001739828
chr12:
10313061-10312946
116
OLR1_HUMAN
189-227
39
2
A:189-227
B:189-227
39
39
1.6
ENST00000309539
6
ENSE00001766930
chr12:
10312620-10310904
1717
OLR1_HUMAN
227-273
47
2
A:227-270
B:227-270
44
44
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1yxka_ (A:)
1b: SCOP_d1yxkb_ (B:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Human (Homo sapiens) [TaxId: 9606]
(60)
1a
d1yxka_
A:
1b
d1yxkb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1yxkB00 (B:136-270)
1b: CATH_1yxkA00 (A:141-270)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
1yxkB00
B:136-270
1b
1yxkA00
A:141-270
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Lectin_C_1yxkB01 (B:161-266)
1b: PFAM_Lectin_C_1yxkB02 (B:161-266)
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Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Homo sapiens (Human)
(39)
1a
Lectin_C-1yxkB01
B:161-266
1b
Lectin_C-1yxkB02
B:161-266
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