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1YX2
Biol. Unit 1
Info
Asym.Unit (137 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (68 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PROBABLE AMINOMETHYLTRANSFERASE FROM BACILLUS SUBTILIS
Authors
:
Midwest Center For Structural Genomics (Mcsg)
Date
:
19 Feb 05 (Deposition) - 05 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Aminomethyltransferase, Glycine Cleavage System T Protein, Alpha-Beta, Beta-Barrel, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
Y. Kim, P. Quartey, L. Lezondra, F. Collart, A. Joachimiak
Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
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No.
Name
Count
Type
Full Name
1
EDO
-1
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1yx2a2 (A:283-359)
1b: SCOP_d1yx2b2 (B:283-362)
2a: SCOP_d1yx2a1 (A:2-282)
2b: SCOP_d1yx2b1 (B:1-282)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
Aminomethyltransferase beta-barrel domain
(15)
Family
:
Aminomethyltransferase beta-barrel domain
(12)
Protein domain
:
Glycine cleavage system T protein, GcvT
(7)
Bacillus subtilis [TaxId: 1423]
(1)
1a
d1yx2a2
A:283-359
1b
d1yx2b2
B:283-362
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Folate-binding domain
(17)
Superfamily
:
Folate-binding domain
(17)
Family
:
Aminomethyltransferase folate-binding domain
(15)
Protein domain
:
Glycine cleavage system T protein, GcvT
(7)
Bacillus subtilis [TaxId: 1423]
(1)
2a
d1yx2a1
A:2-282
2b
d1yx2b1
B:1-282
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1yx2A02 (A:51-136)
1b: CATH_1yx2B02 (B:51-136)
2a: CATH_1yx2A01 (A:2-50,A:137-235)
2b: CATH_1yx2B01 (B:2-50,B:137-235)
3a: CATH_1yx2B04 (B:280-362)
3b: CATH_1yx2A04 (A:280-359)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
Aminomethyltransferase beta-barrel domains
(3)
Bacillus subtilis. Organism_taxid: 1423.
(1)
1a
1yx2A02
A:51-136
1b
1yx2B02
B:51-136
Topology
:
Gyrase A; domain 2
(166)
Homologous Superfamily
:
Probable tRNA modification gtpase trme; domain 1
(18)
Bacillus subtilis. Organism_taxid: 1423.
(1)
2a
1yx2A01
A:2-50,A:137-235
2b
1yx2B01
B:2-50,B:137-235
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Aminomethyltransferase beta-barrel domains
(17)
Bacillus subtilis. Organism_taxid: 1423.
(1)
3a
1yx2B04
B:280-362
3b
1yx2A04
A:280-359
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_GCV_T_1yx2B01 (B:46-258)
1b: PFAM_GCV_T_1yx2B02 (B:46-258)
2a: PFAM_GCV_T_C_1yx2B03 (B:265-357)
2b: PFAM_GCV_T_C_1yx2B04 (B:265-357)
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Clan
:
FBD
(14)
Family
:
GCV_T
(12)
Bacillus subtilis
(1)
1a
GCV_T-1yx2B01
B:46-258
1b
GCV_T-1yx2B02
B:46-258
Clan
:
no clan defined [family: GCV_T_C]
(10)
Family
:
GCV_T_C
(10)
Bacillus subtilis
(1)
2a
GCV_T_C-1yx2B03
B:265-357
2b
GCV_T_C-1yx2B04
B:265-357
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Asym.Unit (137 KB)
Header - Asym.Unit
Biol.Unit 1 (67 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
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