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1YVL
Biol. Unit 4
Info
Asym.Unit (228 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (113 KB)
Biol.Unit 3 (438 KB)
Biol.Unit 4 (221 KB)
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(1)
Title
:
STRUCTURE OF UNPHOSPHORYLATED STAT1
Authors
:
X. Mao, Z. Ren, G. N. Parker, H. Sondermann, M. A. Pastorello, W. Wang, J. S. Mcmurray, B. Demeler, J. E. Darnell Jr. , X. Chen
Date
:
16 Feb 05 (Deposition) - 22 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,C,D (2x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Mao, Z. Ren, G. N. Parker, H. Sondermann, M. A. Pastorello, W. Wang, J. S. Mcmurray, B. Demeler, J. E. Darnell, X. Chen
Structural Bases Of Unphosphorylated Stat1 Association And Receptor Binding.
Mol. Cell V. 17 761 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: GOLD ION (AUa)
1b: GOLD ION (AUb)
2a: O-PHOSPHOTYROSINE (PTRa)
2b: O-PHOSPHOTYROSINE (PTRb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AU
-1
Ligand/Ion
GOLD ION
2
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:247 , PRO A:332
BINDING SITE FOR RESIDUE AU A 2001
2
AC2
SOFTWARE
CYS B:1247 , PRO B:1332
BINDING SITE FOR RESIDUE AU B 2002
[
close Site info
]
SAPs(SNPs)/Variants
(21, 42)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_034521 (I1030T, chain A/A/B, )
02: VAR_065934 (D1165G, chain A/A/B, )
03: VAR_065935 (D1165H, chain A/A/B, )
04: VAR_065936 (Y1170N, chain A/A/B, )
05: VAR_065937 (C1174R, chain A/A/B, )
06: VAR_065815 (K1201N, chain A/A/B, )
07: VAR_065938 (M1202I, chain A/A/B, )
08: VAR_065939 (M1202V, chain A/A/B, )
09: VAR_065940 (A1267V, chain A/A/B, )
10: VAR_065941 (Q1271P, chain A/A/B, )
11: VAR_065942 (R1274Q, chain A/A/B, )
12: VAR_065943 (R1274W, chain A/A/B, )
13: VAR_065944 (K1286I, chain A/A/B, )
14: VAR_065945 (T1288A, chain A/A/B, )
15: VAR_065816 (E1320Q, chain A/A/B, )
16: VAR_065817 (Q1463H, chain A/A/B, )
17: VAR_036001 (P1491A, chain A/A/B, )
18: VAR_STAT1_HUMAN_CCDS2309_1_01 (P1491A, chain A/A/B, )
19: VAR_018265 (L1600P, chain A/A/B, )
20: VAR_068713 (K1637E, chain A/A/B, )
21: VAR_068714 (K1673R, chain A/A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_034521
I
30
T
STAT1_HUMAN
Polymorphism
34255470
A
A/B
I
30
1030
T
02
UniProt
VAR_065934
D
165
G
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
D
165
1165
G
03
UniProt
VAR_065935
D
165
H
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
D
165
1165
H
04
UniProt
VAR_065936
Y
170
N
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
Y
170
1170
N
05
UniProt
VAR_065937
C
174
R
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
C
174
1174
R
06
UniProt
VAR_065815
K
201
N
STAT1_HUMAN
Disease (IMD31B)
---
A
A/B
K
201
1201
N
07
UniProt
VAR_065938
M
202
I
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
M
202
1202
I
08
UniProt
VAR_065939
M
202
V
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
M
202
1202
V
09
UniProt
VAR_065940
A
267
V
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
A
267
1267
V
10
UniProt
VAR_065941
Q
271
P
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
Q
271
1271
P
11
UniProt
VAR_065942
R
274
Q
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
R
274
1274
Q
12
UniProt
VAR_065943
R
274
W
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
R
274
1274
W
13
UniProt
VAR_065944
K
286
I
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
K
286
1286
I
14
UniProt
VAR_065945
T
288
A
STAT1_HUMAN
Disease (IMD31C)
---
A
A/B
T
288
1288
A
15
UniProt
VAR_065816
E
320
Q
STAT1_HUMAN
Disease (IMD31A)
---
A
A/B
E
320
1320
Q
16
UniProt
VAR_065817
Q
463
H
STAT1_HUMAN
Disease (IMD31A)
---
A
A/B
Q
463
1463
H
17
UniProt
VAR_036001
P
491
A
STAT1_HUMAN
Unclassified
---
A
A/B
P
491
1491
A
18
CancerSNP
VAR_STAT1_HUMAN_CCDS2309_1_01
*
P
491
A
STAT1_HUMAN
Disease (Breast cancer)
---
A
A/B
P
491
1491
A
19
UniProt
VAR_018265
L
600
P
STAT1_HUMAN
Disease (IMD31B)
---
A
A/B
L
600
1600
P
20
UniProt
VAR_068713
K
637
E
STAT1_HUMAN
Disease (IMD31A)
---
A
A/B
K
637
1637
E
21
UniProt
VAR_068714
K
673
R
STAT1_HUMAN
Disease (IMD31A)
---
A
A/B
K
673
1673
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:573-670,B:1573-1670)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
STAT1_HUMAN
573-670
2
A:573-670
B:1573-1670
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(5, 10)
Info
all CATH domains
1a: CATH_1yvlB05 (B:1582-1683)
1b: CATH_1yvlA05 (A:582-683)
2a: CATH_1yvlA04 (A:461-581)
2b: CATH_1yvlB04 (B:1461-1581)
3a: CATH_1yvlA01 (A:2-126)
3b: CATH_1yvlB01 (B:1002-1123)
4a: CATH_1yvlB02 (B:1135-1315)
4b: CATH_1yvlA02 (A:133-315)
5a: CATH_1yvlA03 (A:316-460)
5b: CATH_1yvlB03 (B:1316-1460)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
1yvlB05
B:1582-1683
1b
1yvlA05
A:582-683
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
2a
1yvlA04
A:461-581
2b
1yvlB04
B:1461-1581
Topology
:
Transcription Factor, Stat-4
(2)
Homologous Superfamily
:
Transcription Factor, Stat-4;
(2)
Human (Homo sapiens)
(1)
3a
1yvlA01
A:2-126
3b
1yvlB01
B:1002-1123
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.20, no name defined]
(4)
Human (Homo sapiens)
(2)
4a
1yvlB02
B:1135-1315
4b
1yvlA02
A:133-315
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.630, no name defined]
(5)
Human (Homo sapiens)
(2)
5a
1yvlA03
A:316-460
5b
1yvlB03
B:1316-1460
[
close CATH info
]
Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_STAT_bind_1yvlB01 (B:1317-1567)
1b: PFAM_STAT_bind_1yvlB02 (B:1317-1567)
2a: PFAM_SH2_1yvlB03 (B:1577-1658)
2b: PFAM_SH2_1yvlB04 (B:1577-1658)
3a: PFAM_STAT_alpha_1yvlB05 (B:1136-1315)
3b: PFAM_STAT_alpha_1yvlB06 (B:1136-1315)
4a: PFAM_STAT_int_1yvlB07 (B:1002-1122)
4b: PFAM_STAT_int_1yvlB08 (B:1002-1122)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P53-like
(54)
Family
:
STAT_bind
(2)
Homo sapiens (Human)
(1)
1a
STAT_bind-1yvlB01
B:1317-1567
1b
STAT_bind-1yvlB02
B:1317-1567
Clan
:
no clan defined [family: SH2]
(119)
Family
:
SH2
(119)
Homo sapiens (Human)
(79)
2a
SH2-1yvlB03
B:1577-1658
2b
SH2-1yvlB04
B:1577-1658
Clan
:
no clan defined [family: STAT_alpha]
(2)
Family
:
STAT_alpha
(2)
Homo sapiens (Human)
(1)
3a
STAT_alpha-1yvlB05
B:1136-1315
3b
STAT_alpha-1yvlB06
B:1136-1315
Clan
:
no clan defined [family: STAT_int]
(1)
Family
:
STAT_int
(1)
Homo sapiens (Human)
(1)
4a
STAT_int-1yvlB07
B:1002-1122
4b
STAT_int-1yvlB08
B:1002-1122
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (228 KB)
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