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1YVL
Asym. Unit
Info
Asym.Unit (228 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (113 KB)
Biol.Unit 3 (438 KB)
Biol.Unit 4 (221 KB)
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(1)
Title
:
STRUCTURE OF UNPHOSPHORYLATED STAT1
Authors
:
X. Mao, Z. Ren, G. N. Parker, H. Sondermann, M. A. Pastorello, W. Wang, J. S. Mcmurray, B. Demeler, J. E. Darnell Jr. , X. Chen
Date
:
16 Feb 05 (Deposition) - 22 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,C,D (2x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Mao, Z. Ren, G. N. Parker, H. Sondermann, M. A. Pastorello, W. Wang, J. S. Mcmurray, B. Demeler, J. E. Darnell, X. Chen
Structural Bases Of Unphosphorylated Stat1 Association And Receptor Binding.
Mol. Cell V. 17 761 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: GOLD ION (AUa)
1b: GOLD ION (AUb)
2a: O-PHOSPHOTYROSINE (PTRa)
2b: O-PHOSPHOTYROSINE (PTRb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AU
2
Ligand/Ion
GOLD ION
2
PTR
2
Mod. Amino Acid
O-PHOSPHOTYROSINE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:247 , PRO A:332
BINDING SITE FOR RESIDUE AU A 2001
2
AC2
SOFTWARE
CYS B:1247 , PRO B:1332
BINDING SITE FOR RESIDUE AU B 2002
[
close Site info
]
SAPs(SNPs)/Variants
(21, 42)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_034521 (I1030T, chain A/B, )
02: VAR_065934 (D1165G, chain A/B, )
03: VAR_065935 (D1165H, chain A/B, )
04: VAR_065936 (Y1170N, chain A/B, )
05: VAR_065937 (C1174R, chain A/B, )
06: VAR_065815 (K1201N, chain A/B, )
07: VAR_065938 (M1202I, chain A/B, )
08: VAR_065939 (M1202V, chain A/B, )
09: VAR_065940 (A1267V, chain A/B, )
10: VAR_065941 (Q1271P, chain A/B, )
11: VAR_065942 (R1274Q, chain A/B, )
12: VAR_065943 (R1274W, chain A/B, )
13: VAR_065944 (K1286I, chain A/B, )
14: VAR_065945 (T1288A, chain A/B, )
15: VAR_065816 (E1320Q, chain A/B, )
16: VAR_065817 (Q1463H, chain A/B, )
17: VAR_036001 (P1491A, chain A/B, )
18: VAR_STAT1_HUMAN_CCDS2309_1_01 (P1491A, chain A/B, )
19: VAR_018265 (L1600P, chain A/B, )
20: VAR_068713 (K1637E, chain A/B, )
21: VAR_068714 (K1673R, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_034521
I
30
T
STAT1_HUMAN
Polymorphism
34255470
A
B
I
30
1030
T
02
UniProt
VAR_065934
D
165
G
STAT1_HUMAN
Disease (IMD31C)
---
A
B
D
165
1165
G
03
UniProt
VAR_065935
D
165
H
STAT1_HUMAN
Disease (IMD31C)
---
A
B
D
165
1165
H
04
UniProt
VAR_065936
Y
170
N
STAT1_HUMAN
Disease (IMD31C)
---
A
B
Y
170
1170
N
05
UniProt
VAR_065937
C
174
R
STAT1_HUMAN
Disease (IMD31C)
---
A
B
C
174
1174
R
06
UniProt
VAR_065815
K
201
N
STAT1_HUMAN
Disease (IMD31B)
---
A
B
K
201
1201
N
07
UniProt
VAR_065938
M
202
I
STAT1_HUMAN
Disease (IMD31C)
---
A
B
M
202
1202
I
08
UniProt
VAR_065939
M
202
V
STAT1_HUMAN
Disease (IMD31C)
---
A
B
M
202
1202
V
09
UniProt
VAR_065940
A
267
V
STAT1_HUMAN
Disease (IMD31C)
---
A
B
A
267
1267
V
10
UniProt
VAR_065941
Q
271
P
STAT1_HUMAN
Disease (IMD31C)
---
A
B
Q
271
1271
P
11
UniProt
VAR_065942
R
274
Q
STAT1_HUMAN
Disease (IMD31C)
---
A
B
R
274
1274
Q
12
UniProt
VAR_065943
R
274
W
STAT1_HUMAN
Disease (IMD31C)
---
A
B
R
274
1274
W
13
UniProt
VAR_065944
K
286
I
STAT1_HUMAN
Disease (IMD31C)
---
A
B
K
286
1286
I
14
UniProt
VAR_065945
T
288
A
STAT1_HUMAN
Disease (IMD31C)
---
A
B
T
288
1288
A
15
UniProt
VAR_065816
E
320
Q
STAT1_HUMAN
Disease (IMD31A)
---
A
B
E
320
1320
Q
16
UniProt
VAR_065817
Q
463
H
STAT1_HUMAN
Disease (IMD31A)
---
A
B
Q
463
1463
H
17
UniProt
VAR_036001
P
491
A
STAT1_HUMAN
Unclassified
---
A
B
P
491
1491
A
18
CancerSNP
VAR_STAT1_HUMAN_CCDS2309_1_01
*
P
491
A
STAT1_HUMAN
Disease (Breast cancer)
---
A
B
P
491
1491
A
19
UniProt
VAR_018265
L
600
P
STAT1_HUMAN
Disease (IMD31B)
---
A
B
L
600
1600
P
20
UniProt
VAR_068713
K
637
E
STAT1_HUMAN
Disease (IMD31A)
---
A
B
K
637
1637
E
21
UniProt
VAR_068714
K
673
R
STAT1_HUMAN
Disease (IMD31A)
---
A
B
K
673
1673
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:573-670,B:1573-1670)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
STAT1_HUMAN
573-670
2
A:573-670
B:1573-1670
[
close PROSITE info
]
Exons
(20, 40)
Info
All Exons
Exon 1.6 (A:2-43 | B:1002-1043)
Exon 1.7b (A:43-91 | B:1043-1091)
Exon 1.8 (A:92-124 | B:1092-1123)
Exon 1.9b (A:125-154 (gaps) | B:1135-1154)
Exon 1.10 (A:155-181 | B:1155-1181)
Exon 1.11 (A:181-211 (gaps) | B:1181-1211 (ga...)
Exon 1.12 (A:212-262 | B:1212-1262)
Exon 1.13 (A:262-315 | B:1262-1315)
Exon 1.14 (A:315-346 | B:1315-1346)
Exon 1.15 (A:346-366 | B:1346-1366)
Exon 1.16 (A:366-376 | B:1366-1376)
Exon 1.17 (A:376-407 | B:1376-1407)
Exon 1.18 (A:408-414 | B:1408-1412)
Exon 1.19 (A:425-449 | B:1422-1449)
Exon 1.20a (A:450-482 | B:1450-1482)
Exon 1.21 (A:483-528 | B:1483-1528)
Exon 1.22 (A:528-544 | B:1528-1544)
Exon 1.23 (A:550-576 | B:1545-1576)
Exon 1.24a (A:576-625 (gaps) | B:1576-1625 (ga...)
Exon 1.25a (A:625-683 | B:1625-1683)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4b/1.6
02: Boundary 1.6/1.7b
03: Boundary 1.7b/1.8
04: Boundary 1.8/1.9b
05: Boundary 1.9b/1.10
06: Boundary 1.10/1.11
07: Boundary 1.11/1.12
08: Boundary 1.12/1.13
09: Boundary 1.13/1.14
10: Boundary 1.14/1.15
11: Boundary 1.15/1.16
12: Boundary 1.16/1.17
13: Boundary 1.17/1.18
14: Boundary 1.18/1.19
15: Boundary 1.19/1.20a
16: Boundary 1.20a/1.21
17: Boundary 1.21/1.22
18: Boundary 1.22/1.23
19: Boundary 1.23/1.24a
20: Boundary 1.24a/1.25a
21: Boundary 1.25a/1.26a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000361099
3a
ENSE00001789696
chr2:
191878976-191878744
233
STAT1_HUMAN
-
0
0
-
-
1.4b
ENST00000361099
4b
ENSE00001424647
chr2:
191878404-191878251
154
STAT1_HUMAN
-
0
0
-
-
1.6
ENST00000361099
6
ENSE00001710084
chr2:
191874730-191874602
129
STAT1_HUMAN
1-43
43
2
A:2-43
B:1002-1043
42
42
1.7b
ENST00000361099
7b
ENSE00000783935
chr2:
191873833-191873689
145
STAT1_HUMAN
43-91
49
2
A:43-91
B:1043-1091
49
49
1.8
ENST00000361099
8
ENSE00000783936
chr2:
191872387-191872289
99
STAT1_HUMAN
92-124
33
2
A:92-124
B:1092-1123
33
32
1.9b
ENST00000361099
9b
ENSE00000783937
chr2:
191865889-191865800
90
STAT1_HUMAN
125-154
30
2
A:125-154 (gaps)
B:1135-1154
30
20
1.10
ENST00000361099
10
ENSE00002191774
chr2:
191864430-191864352
79
STAT1_HUMAN
155-181
27
2
A:155-181
B:1155-1181
27
27
1.11
ENST00000361099
11
ENSE00000783939
chr2:
191863034-191862943
92
STAT1_HUMAN
181-211
31
2
A:181-211 (gaps)
B:1181-1211 (gaps)
31
31
1.12
ENST00000361099
12
ENSE00001660227
chr2:
191862733-191862582
152
STAT1_HUMAN
212-262
51
2
A:212-262
B:1212-1262
51
51
1.13
ENST00000361099
13
ENSE00001759028
chr2:
191859945-191859787
159
STAT1_HUMAN
262-315
54
2
A:262-315
B:1262-1315
54
54
1.14
ENST00000361099
14
ENSE00001685361
chr2:
191856046-191855954
93
STAT1_HUMAN
315-346
32
2
A:315-346
B:1315-1346
32
32
1.15
ENST00000361099
15
ENSE00001600539
chr2:
191854400-191854341
60
STAT1_HUMAN
346-366
21
2
A:346-366
B:1346-1366
21
21
1.16
ENST00000361099
16
ENSE00001722161
chr2:
191851794-191851765
30
STAT1_HUMAN
366-376
11
2
A:366-376
B:1366-1376
11
11
1.17
ENST00000361099
17
ENSE00001753235
chr2:
191851673-191851580
94
STAT1_HUMAN
376-407
32
2
A:376-407
B:1376-1407
32
32
1.18
ENST00000361099
18
ENSE00001793779
chr2:
191850386-191850345
42
STAT1_HUMAN
408-421
14
2
A:408-414
B:1408-1412
7
5
1.19
ENST00000361099
19
ENSE00001709373
chr2:
191849119-191849036
84
STAT1_HUMAN
422-449
28
2
A:425-449
B:1422-1449
25
28
1.20a
ENST00000361099
20a
ENSE00001681940
chr2:
191848466-191848368
99
STAT1_HUMAN
450-482
33
2
A:450-482
B:1450-1482
33
33
1.21
ENST00000361099
21
ENSE00001626985
chr2:
191847244-191847109
136
STAT1_HUMAN
483-528
46
2
A:483-528
B:1483-1528
46
46
1.22
ENST00000361099
22
ENSE00001790158
chr2:
191845395-191845346
50
STAT1_HUMAN
528-544
17
2
A:528-544
B:1528-1544
17
17
1.23
ENST00000361099
23
ENSE00001681641
chr2:
191844592-191844498
95
STAT1_HUMAN
545-576
32
2
A:550-576
B:1545-1576
27
32
1.24a
ENST00000361099
24a
ENSE00001644039
chr2:
191843727-191843582
146
STAT1_HUMAN
576-625
50
2
A:576-625 (gaps)
B:1576-1625 (gaps)
50
50
1.25a
ENST00000361099
25a
ENSE00001606617
chr2:
191841751-191841566
186
STAT1_HUMAN
625-687
63
2
A:625-683
B:1625-1683
59
59
1.26a
ENST00000361099
26a
ENSE00001259817
chr2:
191840613-191840538
76
STAT1_HUMAN
687-712
26
0
-
-
1.28b
ENST00000361099
28b
ENSE00001650945
chr2:
191839658-191839556
103
STAT1_HUMAN
712-746
35
0
-
-
1.29d
ENST00000361099
29d
ENSE00001068687
chr2:
191835443-191833760
1684
STAT1_HUMAN
747-750
4
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(5, 10)
Info
all CATH domains
1a: CATH_1yvlB05 (B:1582-1683)
1b: CATH_1yvlA05 (A:582-683)
2a: CATH_1yvlA04 (A:461-581)
2b: CATH_1yvlB04 (B:1461-1581)
3a: CATH_1yvlA01 (A:2-126)
3b: CATH_1yvlB01 (B:1002-1123)
4a: CATH_1yvlB02 (B:1135-1315)
4b: CATH_1yvlA02 (A:133-315)
5a: CATH_1yvlA03 (A:316-460)
5b: CATH_1yvlB03 (B:1316-1460)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
1yvlB05
B:1582-1683
1b
1yvlA05
A:582-683
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
2a
1yvlA04
A:461-581
2b
1yvlB04
B:1461-1581
Topology
:
Transcription Factor, Stat-4
(2)
Homologous Superfamily
:
Transcription Factor, Stat-4;
(2)
Human (Homo sapiens)
(1)
3a
1yvlA01
A:2-126
3b
1yvlB01
B:1002-1123
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.20, no name defined]
(4)
Human (Homo sapiens)
(2)
4a
1yvlB02
B:1135-1315
4b
1yvlA02
A:133-315
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.630, no name defined]
(5)
Human (Homo sapiens)
(2)
5a
1yvlA03
A:316-460
5b
1yvlB03
B:1316-1460
[
close CATH info
]
Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_STAT_bind_1yvlB01 (B:1317-1567)
1b: PFAM_STAT_bind_1yvlB02 (B:1317-1567)
2a: PFAM_SH2_1yvlB03 (B:1577-1658)
2b: PFAM_SH2_1yvlB04 (B:1577-1658)
3a: PFAM_STAT_alpha_1yvlB05 (B:1136-1315)
3b: PFAM_STAT_alpha_1yvlB06 (B:1136-1315)
4a: PFAM_STAT_int_1yvlB07 (B:1002-1122)
4b: PFAM_STAT_int_1yvlB08 (B:1002-1122)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P53-like
(54)
Family
:
STAT_bind
(2)
Homo sapiens (Human)
(1)
1a
STAT_bind-1yvlB01
B:1317-1567
1b
STAT_bind-1yvlB02
B:1317-1567
Clan
:
no clan defined [family: SH2]
(119)
Family
:
SH2
(119)
Homo sapiens (Human)
(79)
2a
SH2-1yvlB03
B:1577-1658
2b
SH2-1yvlB04
B:1577-1658
Clan
:
no clan defined [family: STAT_alpha]
(2)
Family
:
STAT_alpha
(2)
Homo sapiens (Human)
(1)
3a
STAT_alpha-1yvlB05
B:1136-1315
3b
STAT_alpha-1yvlB06
B:1136-1315
Clan
:
no clan defined [family: STAT_int]
(1)
Family
:
STAT_int
(1)
Homo sapiens (Human)
(1)
4a
STAT_int-1yvlB07
B:1002-1122
4b
STAT_int-1yvlB08
B:1002-1122
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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(selected part)
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by Exon
by Amino Acid
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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