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1YVE
Asym. Unit
Info
Asym.Unit (364 KB)
Biol.Unit 1 (183 KB)
Biol.Unit 2 (181 KB)
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(1)
Title
:
ACETOHYDROXY ACID ISOMEROREDUCTASE COMPLEXED WITH NADPH, MAGNESIUM AND INHIBITOR IPOHA (N-HYDROXY-N-ISOPROPYLOXAMATE)
Authors
:
V. Biou, R. Dumas, C. Cohen-Addad, R. Douce, D. Job, E. Pebay-Peyroula
Date
:
11 Oct 96 (Deposition) - 04 Sep 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : I,J,K,L
Biol. Unit 1: I,J (1x)
Biol. Unit 2: K,L (1x)
Keywords
:
Oxidoreductase, Branched-Chain Amino Acid Biosynthesis, Magnesium, Nadp, Chloroplast, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Biou, R. Dumas, C. Cohen-Addad, R. Douce, D. Job, E. Pebay-Peyroula
The Crystal Structure Of Plant Acetohydroxy Acid Isomeroreductase Complexed With Nadph, Two Magnesium Ions And A Herbicidal Transition State Analog Determined At 1. 65 A Resolution.
Embo J. V. 16 3405 1997
(for further references see the
PDB file header
)
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: N-HYDROXY-N-ISOPROPYLOXAMIC ACID (HIOa)
2b: N-HYDROXY-N-ISOPROPYLOXAMIC ACID (HIOb)
2c: N-HYDROXY-N-ISOPROPYLOXAMIC ACID (HIOc)
2d: N-HYDROXY-N-ISOPROPYLOXAMIC ACID (HIOd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
4a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
4b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
4c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
4d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
HIO
4
Ligand/Ion
N-HYDROXY-N-ISOPROPYLOXAMIC ACID
3
MG
8
Ligand/Ion
MAGNESIUM ION
4
NDP
4
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP I:315 , GLU I:319 , HIO I:603 , HOH I:899 , HOH I:900
BINDING SITE FOR RESIDUE MG I 601
02
AC2
SOFTWARE
ASP I:315 , HIO I:603 , HOH I:895 , HOH I:896 , HOH I:897
BINDING SITE FOR RESIDUE MG I 602
03
AC3
SOFTWARE
GLN I:142 , ARG I:259
BINDING SITE FOR RESIDUE CL I 604
04
AC4
SOFTWARE
ASP J:315 , GLU J:319 , HIO J:603 , HOH J:930 , HOH L:796
BINDING SITE FOR RESIDUE MG J 601
05
AC5
SOFTWARE
ASP J:315 , HIO J:603 , HOH J:926 , HOH J:927 , HOH J:928
BINDING SITE FOR RESIDUE MG J 602
06
AC6
SOFTWARE
ARG J:259 , HOH J:607
BINDING SITE FOR RESIDUE CL J 604
07
AC7
SOFTWARE
HIS K:226 , ASP K:315 , NDP K:600 , HIO K:603 , HOH K:715 , HOH K:716
BINDING SITE FOR RESIDUE MG K 601
08
AC8
SOFTWARE
ASP K:315 , HIO K:603 , HOH K:717 , HOH K:718 , HOH K:719
BINDING SITE FOR RESIDUE MG K 602
09
AC9
SOFTWARE
ARG K:259
BINDING SITE FOR RESIDUE CL K 604
10
BC1
SOFTWARE
ASP L:315 , GLU L:319 , HIO L:603 , HOH L:817 , HOH L:818
BINDING SITE FOR RESIDUE MG L 601
11
BC2
SOFTWARE
ASP L:315 , HIO L:603 , HOH L:813 , HOH L:814 , HOH L:815
BINDING SITE FOR RESIDUE MG L 602
12
BC3
SOFTWARE
GLY I:132 , TRP I:133 , GLY I:134 , SER I:135 , GLN I:136 , ARG I:162 , SER I:165 , SER I:167 , MET I:186 , LEU I:199 , ILE I:200 , SER I:201 , ASP I:202 , ALA I:204 , GLN I:205 , SER I:225 , HIS I:226 , PRO I:251 , GLY I:253 , MET I:254 , GLY I:255 , CYS I:517 , SER I:518 , THR I:519 , ARG I:589 , HIO I:603 , HOH I:759 , HOH I:762 , HOH I:763 , HOH I:772 , HOH I:899 , HOH I:901 , HOH I:916 , HOH I:921 , HOH I:940
BINDING SITE FOR RESIDUE NDP I 600
13
BC4
SOFTWARE
MET I:254 , ASP I:315 , GLU I:319 , GLU I:496 , LEU I:501 , CYS I:517 , SER I:518 , ALA I:521 , NDP I:600 , MG I:601 , MG I:602 , HOH I:896 , HOH I:897 , HOH I:899 , HOH I:900
BINDING SITE FOR RESIDUE HIO I 603
14
BC5
SOFTWARE
GLY K:132 , TRP K:133 , GLY K:134 , SER K:135 , GLN K:136 , ARG K:162 , SER K:165 , SER K:167 , LEU K:199 , ILE K:200 , SER K:201 , ASP K:202 , ALA K:204 , GLN K:205 , SER K:225 , HIS K:226 , PRO K:251 , MET K:254 , GLY K:255 , CYS K:517 , SER K:518 , THR K:519 , ARG K:589 , MG K:601 , HIO K:603 , HOH K:642 , HOH K:701 , HOH K:704 , HOH K:709 , HOH K:714 , HOH K:902 , HOH K:905 , HOH K:906 , HOH K:907
BINDING SITE FOR RESIDUE NDP K 600
15
BC6
SOFTWARE
MET J:254 , ASP J:315 , GLU J:319 , GLU J:496 , LEU J:501 , CYS J:517 , SER J:518 , ALA J:521 , MG J:601 , MG J:602 , HOH J:927 , HOH J:928 , NDP L:600 , HOH L:796
BINDING SITE FOR RESIDUE HIO J 603
16
BC7
SOFTWARE
HOH K:621 , HOH K:775 , HOH K:983 , HOH K:984 , HOH K:985 , HOH K:986 , HOH K:987 , GLY L:132 , TRP L:133 , GLY L:134 , SER L:135 , GLN L:136 , ARG L:162 , SER L:165 , SER L:167 , LEU L:199 , ILE L:200 , SER L:201 , ASP L:202 , ALA L:204 , GLN L:205 , SER L:225 , HIS L:226 , PRO L:251 , GLY L:253 , MET L:254 , GLY L:255 , CYS L:517 , SER L:518 , THR L:519 , ARG L:589 , HIO L:603 , HOH L:658 , HOH L:817 , HOH L:984
BINDING SITE FOR RESIDUE NDP K 605
17
BC8
SOFTWARE
MET K:254 , ASP K:315 , GLU K:319 , GLU K:496 , LEU K:501 , CYS K:517 , SER K:518 , ALA K:521 , NDP K:600 , MG K:601 , MG K:602 , HOH K:715 , HOH K:717 , HOH K:719
BINDING SITE FOR RESIDUE HIO K 603
18
BC9
SOFTWARE
TRP J:133 , GLY J:134 , SER J:135 , GLN J:136 , ARG J:162 , SER J:165 , SER J:167 , LEU J:199 , ILE J:200 , SER J:201 , ASP J:202 , ALA J:204 , GLN J:205 , SER J:225 , HIS J:226 , PRO J:251 , MET J:254 , GLY J:255 , CYS J:517 , SER J:518 , THR J:519 , ARG J:589 , HIO J:603 , HOH J:614 , HOH J:977 , HOH L:629 , HOH L:630 , HOH L:631 , HOH L:796 , HOH L:797 , HOH L:798 , HOH L:799 , HOH L:800 , HOH L:801
BINDING SITE FOR RESIDUE NDP L 600
19
CC1
SOFTWARE
NDP K:605 , GLY L:253 , MET L:254 , ASP L:315 , GLU L:319 , GLU L:496 , LEU L:501 , CYS L:517 , SER L:518 , ALA L:521 , MG L:601 , MG L:602 , HOH L:814 , HOH L:815 , HOH L:817 , HOH L:818
BINDING SITE FOR RESIDUE HIO L 603
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1yvei1 (I:308-595)
1b: SCOP_d1yvej1 (J:308-595)
1c: SCOP_d1yvek1 (K:308-595)
1d: SCOP_d1yvel1 (L:308-595)
2a: SCOP_d1yvei2 (I:83-307)
2b: SCOP_d1yvej2 (J:86-307)
2c: SCOP_d1yvek2 (K:86-307)
2d: SCOP_d1yvel2 (L:83-307)
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Classes
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
(5)
Protein domain
:
Class II ketol-acid reductoisomerase
(2)
Spinach (Spinacia oleracea) [TaxId: 3562]
(2)
1a
d1yvei1
I:308-595
1b
d1yvej1
J:308-595
1c
d1yvek1
K:308-595
1d
d1yvel1
L:308-595
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
6-phosphogluconate dehydrogenase-like, N-terminal domain
(69)
Protein domain
:
Class II ketol-acid reductoisomerase (KARI)
(2)
Spinach (Spinacia oleracea) [TaxId: 3562]
(2)
2a
d1yvei2
I:83-307
2b
d1yvej2
J:86-307
2c
d1yvek2
K:86-307
2d
d1yvel2
L:83-307
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1yveJ01 (J:86-301)
1b: CATH_1yveK01 (K:86-301)
1c: CATH_1yveI01 (I:83-301)
1d: CATH_1yveL01 (L:83-301)
2a: CATH_1yveI02 (I:302-594)
2b: CATH_1yveJ02 (J:302-594)
2c: CATH_1yveK02 (K:302-594)
2d: CATH_1yveL02 (L:302-594)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Spinach (Spinacia oleracea)
(10)
1a
1yveJ01
J:86-301
1b
1yveK01
K:86-301
1c
1yveI01
I:83-301
1d
1yveL01
L:83-301
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(60)
Homologous Superfamily
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(59)
Spinach (Spinacia oleracea)
(2)
2a
1yveI02
I:302-594
2b
1yveJ02
J:302-594
2c
1yveK02
K:302-594
2d
1yveL02
L:302-594
[
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]
Pfam Domains
(0, 0)
Info
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