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1YV6
Asym. Unit
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Asym.Unit (24 KB)
Biol.Unit 1 (20 KB)
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(1)
Title
:
X-RAY STRUCTURE OF M23L ONCONASE AT 298K
Authors
:
A. Merlino, L. Mazzarella, A. Carannante, A. Di Fiore, A. Di Donato, E. Notomista, F. Sica
Date
:
15 Feb 05 (Deposition) - 01 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.78
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Crystal Structure, Small Conformational Changes, Onconase Thermal Stability, Ribonucleases, Antitumor Action, Dynamics, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Merlino, L. Mazzarella, A. Carannante, A. Di Fiore, A. Di Donato, E. Notomista, F. Sica
The Importance Of Dynamic Effects On The Enzyme Activity: X-Ray Structure And Molecular Dynamics Of Onconase Mutants
J. Biol. Chem. V. 280 17953 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
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All Hetero Components
1a: PYROGLUTAMIC ACID (PCAa)
2a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
PCA
1
Mod. Amino Acid
PYROGLUTAMIC ACID
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:9 , HIS A:10 , LYS A:55 , HIS A:97 , PHE A:98 , HOH A:519 , HOH A:533 , HOH A:573
BINDING SITE FOR RESIDUE SO4 A 501
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
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1: RNASE_PANCREATIC (A:30-36)
;
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PROSITE
UniProtKB
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No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_PANCREATIC
PS00127
Pancreatic ribonuclease family signature.
RNP30_LITPI
30-36
1
A:30-36
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1yv6a_ (A:)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
RNase A-like
(356)
Superfamily
:
RNase A-like
(356)
Family
:
Ribonuclease A-like
(347)
Protein domain
:
Amphibian cytotoxic ribonuclease
(18)
Frog (Rana pipiens), P-30 [TaxId: 8404]
(10)
1a
d1yv6a_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1yv6A00 (A:2-104)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
P-30 Protein
(299)
Homologous Superfamily
:
P-30 Protein
(299)
Northern leopard frog (Rana pipiens)
(11)
1a
1yv6A00
A:2-104
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Pfam Domains
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Asymmetric Unit 1
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