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1YUM
Asym. Unit
Info
Asym.Unit (165 KB)
Biol.Unit 1 (158 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NICOTINIC ACID MONONUCLEOTIDE ADENYLYLTRANSFERASE FROM PSEUDOMONAS AERUGINOSA
Authors
:
H. J. Yoon, H. L. Kim, B. Mikami, S. W. Suh
Date
:
14 Feb 05 (Deposition) - 08 Nov 05 (Release) - 29 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Alpha/Beta Domain, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
H. J. Yoon, H. L. Kim, B. Mikami, S. W. Suh
Crystal Structure Of Nicotinic Acid Mononucleotide Adenylyltransferase From Pseudomonas Aeruginosa In Its Apo And Substrate-Complexed Forms Reveals A Fully Open Conformation
J. Mol. Biol. V. 351 258 2005
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
1d: CITRIC ACID (CITd)
2a: NICOTINATE MONONUCLEOTIDE (NCNa)
2b: NICOTINATE MONONUCLEOTIDE (NCNb)
2c: NICOTINATE MONONUCLEOTIDE (NCNc)
2d: NICOTINATE MONONUCLEOTIDE (NCNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIT
4
Ligand/Ion
CITRIC ACID
2
NCN
4
Ligand/Ion
NICOTINATE MONONUCLEOTIDE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:11 , PHE A:12 , HIS A:16 , HIS A:19 , SER A:178 , ALA A:179 , THR A:180 , HOH A:455
BINDING SITE FOR RESIDUE CIT A 301
2
AC2
SOFTWARE
ASN A:40 , TYR A:84 , THR A:85 , ALA A:110 , TRP A:117 , HIS A:118 , HOH A:1174
BINDING SITE FOR RESIDUE NCN A 302
3
AC3
SOFTWARE
HIS B:16 , HIS B:19 , SER B:178 , ALA B:179 , THR B:180 , HOH B:497 , HOH B:515 , HOH B:532
BINDING SITE FOR RESIDUE CIT B 1301
4
AC4
SOFTWARE
ASN B:40 , TYR B:84 , THR B:85 , TRP B:117 , HIS B:118 , HOH B:520 , HOH B:556 , HOH B:587
BINDING SITE FOR RESIDUE NCN B 1302
5
AC5
SOFTWARE
THR C:11 , PHE C:12 , ASP C:13 , HIS C:16 , HIS C:19 , SER C:178 , ALA C:179 , THR C:180 , HOH C:724 , HOH C:814 , HOH C:842 , HOH C:861
BINDING SITE FOR RESIDUE CIT C 2301
6
AC6
SOFTWARE
ASN C:40 , TYR C:84 , THR C:85 , TRP C:117 , HIS C:118 , HOH C:712 , HOH C:751 , HOH C:778 , HOH C:827 , HOH C:1167
BINDING SITE FOR RESIDUE NCN C 2302
7
AC7
SOFTWARE
THR D:11 , PHE D:12 , HIS D:16 , HIS D:19 , SER D:178 , ALA D:179 , THR D:180 , HOH D:888 , HOH D:920 , HOH D:942 , HOH D:1035 , HOH D:1160
BINDING SITE FOR RESIDUE CIT D 3301
8
AC8
SOFTWARE
ASN D:40 , TYR D:84 , THR D:85 , TRP D:117 , HIS D:118 , HOH D:945 , HOH D:970
BINDING SITE FOR RESIDUE NCN D 3302
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1yuma_ (A:)
1b: SCOP_d1yumb_ (B:)
1c: SCOP_d1yumc_ (C:)
1d: SCOP_d1yumd_ (D:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Pseudomonas aeruginosa [TaxId: 287]
(3)
1a
d1yuma_
A:
1b
d1yumb_
B:
1c
d1yumc_
C:
1d
d1yumd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1yumA00 (A:2-213)
1b: CATH_1yumB00 (B:2-213)
1c: CATH_1yumC00 (C:2-213)
1d: CATH_1yumD00 (D:2-213)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Pseudomonas aeruginosa. Organism_taxid: 287.
(3)
1a
1yumA00
A:2-213
1b
1yumB00
B:2-213
1c
1yumC00
C:2-213
1d
1yumD00
D:2-213
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_CTP_transf_2_1yumD01 (D:7-185)
1b: PFAM_CTP_transf_2_1yumD02 (D:7-185)
1c: PFAM_CTP_transf_2_1yumD03 (D:7-185)
1d: PFAM_CTP_transf_2_1yumD04 (D:7-185)
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Clan
:
HUP
(230)
Family
:
CTP_transf_2
(36)
Pseudomonas aeruginosa
(2)
1a
CTP_transf_2-1yumD01
D:7-185
1b
CTP_transf_2-1yumD02
D:7-185
1c
CTP_transf_2-1yumD03
D:7-185
1d
CTP_transf_2-1yumD04
D:7-185
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Asymmetric Unit 1
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