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1YTV
Asym. Unit
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Asym.Unit (136 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
MALTOSE-BINDING PROTEIN FUSION TO A C-TERMINAL FRAGMENT OF THE V1A VASOPRESSIN RECEPTOR
Authors
:
N. V Adikesavan, S. S. Mahmood, S. Stanley, , Z. Xu, N. Wu, M. Thibonnier, M. Shoham
Date
:
11 Feb 05 (Deposition) - 12 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,M,N
Biol. Unit 1: A,B,M,N (1x)
Keywords
:
Vasopressin; Receptor; Gpcr; Fusion Protein; Maltose- Binding Protein, Sugar Binding Protein, Hormone Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. V. Adikesavan, S. S. Mahmood, N. Stanley, Z. Xu, N. Wu, M. Thibonnier, M. Shoham
A C-Terminal Segment Of The V1R Vasopressin Receptor Is Unstructured In The Crystal Structure Of Its Chimera With The Maltose-Binding Protein.
Acta Crystallogr. , Sect. F V. 61 341 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: MALTOSE (MALa)
1b: MALTOSE (MALb)
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Label:
No.
Name
Count
Type
Full Name
1
MAL
2
Ligand/Ion
MALTOSE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:29 , TRP A:76 , ALA A:77 , ASP A:79 , ARG A:80 , GLU A:125 , GLU A:167 , PRO A:168 , TYR A:169 , TRP A:354 , ARG A:358 , HOH A:507 , HOH A:610 , HOH A:716 , HOH A:734 , HOH A:776 , HOH A:784
BINDING SITE FOR RESIDUE MAL A 401
2
AC2
SOFTWARE
LYS B:29 , TRP B:76 , ALA B:77 , ASP B:79 , ARG B:80 , GLU B:125 , GLU B:167 , PRO B:168 , TYR B:169 , TRP B:354 , HOH B:534 , HOH B:622 , HOH B:740 , HOH B:815 , HOH B:1034
BINDING SITE FOR RESIDUE MAL B 402
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_1 (A:121-138,B:121-138,A:121-138,B:12...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
MALE_ECO57
133-150
2
A:121-138
B:121-138
MALE_ECOLI
133-150
2
A:121-138
B:121-138
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Exons
(2, 2)
Info
All Exons
Exon 1.1 (- | N:381-385 (gaps))
Exon 1.2 (M:381-386 (gaps) | -)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000299178
1
ENSE00001100236
chr12:
63546590-63543647
2944
V1AR_HUMAN
1-324
324
1
-
N:381-385 (gaps)
-
26
1.2
ENST00000299178
2
ENSE00001100233
chr12:
63541425-63540216
1210
V1AR_HUMAN
324-418
95
1
M:381-386 (gaps)
-
18
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ytva_ (A:)
1b: SCOP_d1ytvb_ (B:)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
D-maltodextrin-binding protein, MBP
(70)
Escherichia coli [TaxId: 562]
(60)
1a
d1ytva_
A:
1b
d1ytvb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ytvA01 (A:19-125,A:274-345)
1b: CATH_1ytvB01 (B:19-125,B:274-345)
1c: CATH_1ytvA02 (A:126-273,A:346-380)
1d: CATH_1ytvB02 (B:126-273,B:346-380)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Escherichia coli. Organism_taxid: 562.
(22)
1a
1ytvA01
A:19-125,A:274-345
1b
1ytvB01
B:19-125,B:274-345
1c
1ytvA02
A:126-273,A:346-380
1d
1ytvB02
B:126-273,B:346-380
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_SBP_bac_1_1ytvB01 (B:25-305)
1b: PFAM_SBP_bac_1_1ytvB02 (B:25-305)
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)
Clan
:
PBP
(391)
Family
:
SBP_bac_1
(83)
Escherichia coli O157:H7
(23)
1a
SBP_bac_1-1ytvB01
B:25-305
1b
SBP_bac_1-1ytvB02
B:25-305
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Asymmetric Unit 1
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