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1YSI
Asym. Unit
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Asym.Unit (57 KB)
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(1)
Title
:
SOLUTION STRUCTURE OF THE ANTI-APOPTOTIC PROTEIN BCL-XL IN COMPLEX WITH AN ACYL-SULFONAMIDE-BASED LIGAND
Authors
:
T. Oltersdorf, S. W. Elmore, A. R. Shoemaker, R. C. Armstrong, D. J. Augeri, B. A. Belli, M. Bruncko, T. L. Deckwerth, J. Dinges, P. J. Hajduk, M. K. Joseph, S. Kitada, S. J. Korsmeyer, A. R. Kunzer, A. Letai, C. Li, M. J. Mitten, D. G. Nettesheim, S. Ng, P. M. Nimmer, J. M. O'Connor, A. Oleksijew, A. M. Petros, J. C. Reed, W. Shen, S. K. Tahir, C. B. Thompson, K. J. Tomaselli, B. Wang, M. D. Wendt, H. Zhang, S. W. Fesik, S. H. Rosenberg
Date
:
08 Feb 05 (Deposition) - 07 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Complex, Apoptosis
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Oltersdorf, S. W. Elmore, A. R. Shoemaker, R. C. Armstrong, D. J. Augeri, B. A. Belli, M. Bruncko, T. L. Deckwerth, J. Dinges, P. J. Hajduk, M. K. Joseph, S. Kitada, S. J. Korsmeyer, A. R. Kunzer, A. Letai, C. Li, M. J. Mitten, D. G. Nettesheim, S. Ng, P. M. Nimmer, J. M. O'Connor, A. Oleksijew, A. M. Petros, J. C. Reed, W. Shen, S. K. Tahir, C. B. Thompson, K. J. Tomaselli, B. Wang, M. D. Wendt, H. Zhang, S. W. Fesik, S. H. Rosenberg
An Inhibitor Of Bcl-2 Family Proteins Induces Regression Of Solid Tumours
Nature V. 435 677 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-[(4'-FLUORO-1,1'-BIPHENYL-4-YL)C... (N3Ba)
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Label:
No.
Name
Count
Type
Full Name
1
N3B
1
Ligand/Ion
N-[(4'-FLUORO-1,1'-BIPHENYL-4-YL)CARBONYL]-3-NITRO-4-{[2-(PHENYLSULFANYL)ETHYL]AMINO}BENZENESULFONAMIDE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:101 , TYR A:105 , ALA A:108 , PHE A:109 , LEU A:134 , ASN A:140 , GLY A:142 , ARG A:143 , VAL A:145 , TYR A:199
BINDING SITE FOR RESIDUE N3B A 1000
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(6, 6)
Info
All PROSITE Patterns/Profiles
1: BH4_1 (A:8-28)
2: BH4_2 (A:9-28)
3: BH3 (A:90-104)
4: BCL2_FAMILY (A:94-194)
5: BH1 (A:134-152)
6: BH2 (A:185-196)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH4_1
PS01260
Apoptosis regulator, Bcl-2 family BH4 motif signature.
B2CL1_HUMAN
4-24
1
A:8-28
2
BH4_2
PS50063
Apoptosis regulator, Bcl-2 family BH4 motif profile.
B2CL1_HUMAN
5-24
1
A:9-28
3
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
B2CL1_HUMAN
86-100
1
A:90-104
4
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
B2CL1_HUMAN
90-190
1
A:94-194
5
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
B2CL1_HUMAN
130-148
1
A:134-152
6
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
B2CL1_HUMAN
181-192
1
A:185-196
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Exons
(2, 2)
Info
All Exons
Exon 1.3a (A:5-192 (gaps))
Exon 1.4c (A:193-221)
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4c
3: Boundary 1.4c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000376062
3a
ENSE00001469279
chr20:
30310400-30309458
943
B2CL1_HUMAN
1-188
188
1
A:5-192 (gaps)
188
1.4c
ENST00000376062
4c
ENSE00001469296
chr20:
30253889-30252255
1635
B2CL1_HUMAN
189-233
45
1
A:193-221
29
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1ysia_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
Bcl-2 inhibitors of programmed cell death
(102)
Protein domain
:
Apoptosis regulator Bcl-xL
(38)
Human (Homo sapiens) [TaxId: 9606]
(28)
1a
d1ysia_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ysiA00 (A:1-221)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Apoptosis Regulator Bcl-x
(29)
Homologous Superfamily
:
Apoptosis Regulator Bcl-x
(29)
Human (Homo sapiens)
(19)
1a
1ysiA00
A:1-221
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_BH4_1ysiA01 (A:5-31)
2a: PFAM_Bcl_2_1ysiA02 (A:94-192)
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Clan
:
no clan defined [family: BH4]
(30)
Family
:
BH4
(30)
Homo sapiens (Human)
(26)
1a
BH4-1ysiA01
A:5-31
Clan
:
no clan defined [family: Bcl-2]
(60)
Family
:
Bcl-2
(60)
Homo sapiens (Human)
(44)
2a
Bcl-2-1ysiA02
A:94-192
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Chain A
Asymmetric Unit 1
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