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1YS4
Biol. Unit 2
Info
Asym.Unit (129 KB)
Biol.Unit 1 (122 KB)
Biol.Unit 2 (240 KB)
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(1)
Title
:
STRUCTURE OF ASPARTATE-SEMIALDEHYDE DEHYDROGENASE FROM METHANOCOCCUS JANNASCHII
Authors
:
C. R. Faehnle, J. F. Ohren, R. E. Viola
Date
:
07 Feb 05 (Deposition) - 01 Nov 05 (Release) - 29 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.29
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Oxidoreductase, Asadh
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. R. Faehnle, J. F. Ohren, R. E. Viola
A New Branch In The Family: Structure Of Aspartate-Beta-Semialdehyde Dehydrogenase From Methanococcu Jannaschii
J. Mol. Biol. V. 353 1055 2005
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Hetero Components
(3, 52)
Info
All Hetero Components
1a: MALONIC ACID (MLAa)
1b: MALONIC ACID (MLAb)
1c: MALONIC ACID (MLAc)
1d: MALONIC ACID (MLAd)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
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Label:
No.
Name
Count
Type
Full Name
1
MLA
8
Ligand/Ion
MALONIC ACID
2
MSE
40
Mod. Amino Acid
SELENOMETHIONINE
3
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:15 , THR A:17 , GLY A:18 , SER A:19 , VAL A:20 , ALA A:41 , SER A:42 , SER A:45 , THR A:74 , PRO A:92 , LEU A:95 , ASN A:113 , SER A:187 , GLY A:188 , ALA A:189 , GLY A:190 , ASN A:333 , THR A:334 , ALA A:338 , MLA A:904 , HOH A:934 , HOH A:983 , HOH A:986 , HOH A:995 , HOH A:1025 , HOH A:1038 , HOH A:1068
BINDING SITE FOR RESIDUE NAP A 900
2
AC2
SOFTWARE
GLY B:15 , THR B:17 , GLY B:18 , SER B:19 , VAL B:20 , ALA B:41 , SER B:42 , SER B:45 , THR B:74 , ALA B:90 , LEU B:91 , PRO B:92 , LEU B:95 , ASN B:113 , GLY B:188 , GLY B:190 , ASN B:333 , THR B:334 , ALA B:338 , MLA B:902 , HOH B:944 , HOH B:986 , HOH B:990 , HOH B:1011 , HOH B:1020 , HOH B:1051 , HOH B:1055 , HOH B:1092 , HOH B:1094 , HOH B:1121
BINDING SITE FOR RESIDUE NAP B 901
3
AC3
SOFTWARE
ASN B:113 , ARG B:118 , ASN B:156 , CYS B:157 , LYS B:213 , NAP B:901 , HOH B:951 , HOH B:1020
BINDING SITE FOR RESIDUE MLA B 902
4
AC4
SOFTWARE
PHE A:206 , ILE A:207 , ASN A:209 , GLU A:210 , GLU A:211 , GLU A:212 , HOH A:914 , HOH A:964 , HOH A:1096 , ARG B:316
BINDING SITE FOR RESIDUE MLA A 903
5
AC5
SOFTWARE
SER A:115 , ARG A:118 , ASN A:156 , CYS A:157 , LYS A:213 , NAP A:900 , HOH A:922 , HOH A:940 , HOH A:1025
BINDING SITE FOR RESIDUE MLA A 904
6
AC6
SOFTWARE
ARG A:316 , PHE B:206 , ILE B:207 , ASN B:209 , GLU B:210 , GLU B:211 , GLU B:212 , HOH B:918 , HOH B:989 , HOH B:1053 , HOH B:1060 , HOH B:1066
BINDING SITE FOR RESIDUE MLA B 905
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ASD (A:237-251,B:237-251)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASD
PS01103
Aspartate-semialdehyde dehydrogenase signature.
DHAS_METJA
237-251
4
A:237-251
B:237-251
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Semialdhyde_dhC_1ys4B01 (B:166-336)
1b: PFAM_Semialdhyde_dhC_1ys4B02 (B:166-336)
2a: PFAM_Semialdhyde_dh_1ys4B03 (B:10-138)
2b: PFAM_Semialdhyde_dh_1ys4B04 (B:10-138)
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Clans
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(
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Clan
:
GADPH_aa-bio_dh
(59)
Family
:
Semialdhyde_dhC
(21)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(1)
1a
Semialdhyde_dhC-1ys4B01
B:166-336
1b
Semialdhyde_dhC-1ys4B02
B:166-336
Clan
:
NADP_Rossmann
(1239)
Family
:
Semialdhyde_dh
(22)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(1)
2a
Semialdhyde_dh-1ys4B03
B:10-138
2b
Semialdhyde_dh-1ys4B04
B:10-138
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Asym.Unit (129 KB)
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