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1YRU
Asym. Unit
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Asym.Unit (73 KB)
Biol.Unit 1 (68 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE ADENYLYL CYCLAES CATALYTIC DOMAIN OF ADENYLYL CYCLASE TOXIN OF BORDETELLA PERTUSSIS IN PRESENCE OF C-TERMINAL CALMODULIN AND 1MM CALCIUM CHLORIDE
Authors
:
Q. Guo, Y. Shen, W. J. Tang
Date
:
04 Feb 05 (Deposition) - 27 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cyaa, Cam, Adenylyl Cyclase, Layse, Toxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Guo, Y. Shen, Y. S. Lee, C. S. Gibbs, M. Mrksich, W. J. Tang
Structural Basis For The Interaction Of Bordetella Pertussis Adenylyl Cyclase Toxin With Calmodulin
Embo J. V. 24 3190 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:129 , ASP B:131 , ASP B:133 , GLN B:135 , GLU B:140
BINDING SITE FOR RESIDUE CA B 800
2
AC2
SOFTWARE
HOH B:42 , ASP B:93 , ASP B:95 , ASN B:97 , TYR B:99 , GLU B:104
BINDING SITE FOR RESIDUE CA B 801
[
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SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_073275 (F89L, chain B, )
2: VAR_073276 (D95V, chain B, )
3: VAR_073277 (N97I, chain B, )
4: VAR_069223 (N97S, chain B, )
5: VAR_073278 (D129G, chain B, )
6: VAR_073279 (D131E, chain B, )
7: VAR_073280 (D133H, chain B, )
8: VAR_073281 (Q135P, chain B, )
9: VAR_073282 (F141L, chain B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_073275
F
90
L
CALM_HUMAN
Disease (LQT14)
---
B
F
89
L
2
UniProt
VAR_073276
D
96
V
CALM_HUMAN
Disease (LQT15)
---
B
D
95
V
3
UniProt
VAR_073277
N
98
I
CALM_HUMAN
Disease (LQT15)
---
B
N
97
I
4
UniProt
VAR_069223
N
98
S
CALM_HUMAN
Disease (CPVT4)
---
B
N
97
S
5
UniProt
VAR_073278
D
130
G
CALM_HUMAN
Disease (LQT14)
---
B
D
129
G
6
UniProt
VAR_073279
D
132
E
CALM_HUMAN
Disease (LQT15)
---
B
D
131
E
7
UniProt
VAR_073280
D
134
H
CALM_HUMAN
Disease (LQT15)
---
B
D
133
H
8
UniProt
VAR_073281
Q
136
P
CALM_HUMAN
Disease (LQT15)
---
B
Q
135
P
9
UniProt
VAR_073282
F
142
L
CALM_HUMAN
Disease (LQT14)
---
B
F
141
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (-|-|B:80-115|B:116-147,-|-|B:80-11...)
2: EF_HAND_1 (-|-|B:93-105|B:129-141,-|-|B:93-10...)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM1_HUMAN
8-43
44-79
81-116
117-149
2
-
-
B:80-115
B:116-147
CALM2_HUMAN
8-43
44-79
81-116
117-149
2
-
-
B:80-115
B:116-147
CALM3_HUMAN
8-43
44-79
81-116
117-149
2
-
-
B:80-115
B:116-147
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM1_HUMAN
21-33
57-69
94-106
130-142
2
-
-
B:93-105
B:129-141
CALM2_HUMAN
21-33
57-69
94-106
130-142
2
-
-
B:93-105
B:129-141
CALM3_HUMAN
21-33
57-69
94-106
130-142
2
-
-
B:93-105
B:129-141
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1yrub_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d1yrub_
B:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1yruB00 (B:79-147)
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(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Bordetella pertussis. Organism_taxid: 520.
(2)
1a
1yruB00
B:79-147
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Anthrax_toxA_1yruA01 (A:7-184)
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(
)
Clan
:
no clan defined [family: Anthrax_toxA]
(16)
Family
:
Anthrax_toxA
(16)
Bordetella pertussis
(3)
1a
Anthrax_toxA-1yruA01
A:7-184
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