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1YRR
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (237 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE FROM ESCHERICHIA COLI K12 AT 2.0 A RESOLUTION
Authors
:
F. M. Ferreira, R. Aparicio, G. Mendoza-Hernandez, M. L. Calcagno, G. O
Date
:
04 Feb 05 (Deposition) - 21 Mar 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
(Beta/Alpha)8 Barrel, Beta Sandwich, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. M. Ferreira, G. Mendoza-Hernandez, R. Aparicio, H. Fischer, M. L. Calcagno, G. Oliva
Structural Analysis Of N-Acetylglucosamine-6-Phosphate Deacetylase Apoenzyme From Escherichia Coli.
J. Mol. Biol. V. 359 308 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:59 , GLU A:131 , HIS A:195 , HIS A:216 , ASP A:273 , HOH A:858 , HOH A:860
BINDING SITE FOR RESIDUE PO4 A 501
2
AC2
SOFTWARE
ASN B:61 , GLU B:131 , HIS B:195 , HIS B:216 , ASP B:273 , HOH B:672
BINDING SITE FOR RESIDUE PO4 B 502
3
AC3
SOFTWARE
THR A:225 , GLY A:226 , ARG A:227 , GLU A:228 , TYR B:223
BINDING SITE FOR RESIDUE GOL A 601
4
AC4
SOFTWARE
ASP A:253 , ALA A:255 , ARG A:258 , HIS A:323 , HOH A:862 , HOH A:865 , HOH A:866 , LEU B:200
BINDING SITE FOR RESIDUE GOL A 602
5
AC5
SOFTWARE
LYS A:261 , ARG A:262 , GLY A:265 , HOH A:863 , HOH A:864
BINDING SITE FOR RESIDUE GOL A 603
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1yrra1 (A:1-53,A:351-382)
1b: SCOP_d1yrrb1 (B:2-53,B:351-382)
2a: SCOP_d1yrra2 (A:54-350)
2b: SCOP_d1yrrb2 (B:54-350)
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Class
:
All beta proteins
(24004)
Fold
:
Composite domain of metallo-dependent hydrolases
(103)
Superfamily
:
Composite domain of metallo-dependent hydrolases
(103)
Family
:
N-acetylglucosamine-6-phosphate deacetylase, NagA
(6)
Protein domain
:
N-acetylglucosamine-6-phosphate deacetylase, NagA
(6)
Escherichia coli [TaxId: 562]
(4)
1a
d1yrra1
A:1-53,A:351-382
1b
d1yrrb1
B:2-53,B:351-382
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
(6)
Protein domain
:
N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
(6)
Escherichia coli [TaxId: 562]
(4)
2a
d1yrra2
A:54-350
2b
d1yrrb2
B:54-350
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1yrrA02 (A:55-280,A:281-344)
1b: CATH_1yrrB02 (B:55-345)
2a: CATH_1yrrA01 (A:1-54,A:345-382)
2b: CATH_1yrrB01 (B:2-54,B:346-382)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Metal-dependent hydrolases
(190)
Escherichia coli. Organism_taxid: 562.
(27)
1a
1yrrA02
A:55-280,A:281-344
1b
1yrrB02
B:55-345
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Urease, subunit C; domain 1
(95)
Homologous Superfamily
:
Urease, subunit C, domain 1
(95)
Escherichia coli. Organism_taxid: 562.
(12)
2a
1yrrA01
A:1-54,A:345-382
2b
1yrrB01
B:2-54,B:346-382
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Amidohydro_1_1yrrB01 (B:50-364)
1b: PFAM_Amidohydro_1_1yrrB02 (B:50-364)
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Clan
:
Amidohydrolase
(126)
Family
:
Amidohydro_1
(28)
Escherichia coli O157:H7
(1)
1a
Amidohydro_1-1yrrB01
B:50-364
1b
Amidohydro_1-1yrrB02
B:50-364
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Asymmetric Unit 1
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Asym.Unit (126 KB)
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