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1YQW
Asym. Unit
Info
Asym.Unit (425 KB)
Biol.Unit 1 (146 KB)
Biol.Unit 2 (145 KB)
Biol.Unit 3 (141 KB)
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(1)
Title
:
STRUCTURE OF THE OXIDIZED UNREADY FORM OF NI-FE HYDROGENASE
Authors
:
A. Volbeda
Date
:
02 Feb 05 (Deposition) - 19 Apr 05 (Release) - 31 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.83
Chains
:
Asym. Unit : A,B,C,Q,R,S
Biol. Unit 1: A,Q (1x)
Biol. Unit 2: B,R (1x)
Biol. Unit 3: C,S (1x)
Keywords
:
Ni-Fe Hydrogenase Unready State, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Volbeda, L. Martin, C. Cavazza, M. Matho, B. W. Faber, W. Roseboom, S. P. Albracht, E. Garcin, M. Rousset, J. C. Fontecilla-Camps
Structural Differences Between The Ready And Unready Oxidized States Of [Nife] Hydrogenases.
J. Biol. Inorg. Chem. V. 10 239 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(9, 42)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
2a: FE3-S4 CLUSTER (F3Sa)
2b: FE3-S4 CLUSTER (F3Sb)
2c: FE3-S4 CLUSTER (F3Sc)
3a: CARBONMONOXIDE-(DICYANO) IRON (FCOa)
3b: CARBONMONOXIDE-(DICYANO) IRON (FCOb)
3c: CARBONMONOXIDE-(DICYANO) IRON (FCOc)
4a: FE (II) ION (FE2a)
4b: FE (II) ION (FE2b)
4c: FE (II) ION (FE2c)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
5i: GLYCEROL (GOLi)
5j: GLYCEROL (GOLj)
5k: GLYCEROL (GOLk)
5l: GLYCEROL (GOLl)
5m: GLYCEROL (GOLm)
5n: GLYCEROL (GOLn)
5o: GLYCEROL (GOLo)
5p: GLYCEROL (GOLp)
5q: GLYCEROL (GOLq)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
6c: MAGNESIUM ION (MGc)
7a: NICKEL (II) ION (NIa)
7b: NICKEL (II) ION (NIb)
7c: NICKEL (II) ION (NIc)
8a: PEROXIDE ION (PERa)
8b: PEROXIDE ION (PERb)
8c: PEROXIDE ION (PERc)
9a: IRON/SULFUR CLUSTER (SF4a)
9b: IRON/SULFUR CLUSTER (SF4b)
9c: IRON/SULFUR CLUSTER (SF4c)
9d: IRON/SULFUR CLUSTER (SF4d)
9e: IRON/SULFUR CLUSTER (SF4e)
9f: IRON/SULFUR CLUSTER (SF4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCT
1
Ligand/Ion
BICARBONATE ION
2
F3S
3
Ligand/Ion
FE3-S4 CLUSTER
3
FCO
3
Ligand/Ion
CARBONMONOXIDE-(DICYANO) IRON
4
FE2
3
Ligand/Ion
FE (II) ION
5
GOL
17
Ligand/Ion
GLYCEROL
6
MG
3
Ligand/Ion
MAGNESIUM ION
7
NI
3
Ligand/Ion
NICKEL (II) ION
8
PER
3
Ligand/Ion
PEROXIDE ION
9
SF4
6
Ligand/Ion
IRON/SULFUR CLUSTER
[
close Hetero Component info
]
Sites
(63, 63)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AS1 (AUTHOR)
11: AS2 (AUTHOR)
12: AS3 (AUTHOR)
13: BC1 (SOFTWARE)
14: BC2 (SOFTWARE)
15: BC3 (SOFTWARE)
16: BC4 (SOFTWARE)
17: BC5 (SOFTWARE)
18: BC6 (SOFTWARE)
19: BC7 (SOFTWARE)
20: BC8 (SOFTWARE)
21: BC9 (SOFTWARE)
22: CC1 (SOFTWARE)
23: CC2 (SOFTWARE)
24: CC3 (SOFTWARE)
25: CC4 (SOFTWARE)
26: CC5 (SOFTWARE)
27: CC6 (SOFTWARE)
28: CC7 (SOFTWARE)
29: CC8 (SOFTWARE)
30: CC9 (SOFTWARE)
31: CT1 (AUTHOR)
32: CT2 (AUTHOR)
33: CT3 (AUTHOR)
34: DC1 (SOFTWARE)
35: DC2 (SOFTWARE)
36: DC3 (SOFTWARE)
37: DC4 (SOFTWARE)
38: DC5 (SOFTWARE)
39: DC6 (SOFTWARE)
40: DC7 (SOFTWARE)
41: DC8 (SOFTWARE)
42: DC9 (SOFTWARE)
43: EC1 (SOFTWARE)
44: EC2 (SOFTWARE)
45: EC3 (SOFTWARE)
46: EC4 (SOFTWARE)
47: EC5 (SOFTWARE)
48: EC6 (SOFTWARE)
49: FD1 (AUTHOR)
50: FD2 (AUTHOR)
51: FD3 (AUTHOR)
52: FM1 (AUTHOR)
53: FM2 (AUTHOR)
54: FM3 (AUTHOR)
55: FP1 (AUTHOR)
56: FP2 (AUTHOR)
57: FP3 (AUTHOR)
58: PO1 (AUTHOR)
59: PO2 (AUTHOR)
60: PO3 (AUTHOR)
61: SO1 (AUTHOR)
62: SO2 (AUTHOR)
63: SO3 (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS Q:72 , CYS Q:75 , CYS Q:543 , CYS Q:546 , FCO Q:550 , PER Q:552 , HOH Q:564
BINDING SITE FOR RESIDUE NI Q 551
02
AC2
SOFTWARE
GLU Q:53 , LEU Q:495 , HIS Q:549 , HOH Q:561 , HOH Q:562 , HOH Q:563
BINDING SITE FOR RESIDUE FE2 Q 553
03
AC3
SOFTWARE
CYS R:72 , CYS R:75 , CYS R:543 , CYS R:546 , FCO R:550 , PER R:552 , HOH R:557
BINDING SITE FOR RESIDUE NI R 551
04
AC4
SOFTWARE
GLU R:53 , LEU R:495 , HIS R:549 , HOH R:554 , HOH R:555 , HOH R:556
BINDING SITE FOR RESIDUE FE2 R 553
05
AC5
SOFTWARE
CYS S:72 , CYS S:75 , CYS S:543 , CYS S:546 , FCO S:550 , PER S:552 , HOH S:557
BINDING SITE FOR RESIDUE NI S 551
06
AC6
SOFTWARE
GLU S:53 , LEU S:495 , HIS S:549 , HOH S:554 , HOH S:555 , HOH S:556
BINDING SITE FOR RESIDUE FE2 S 553
07
AC7
SOFTWARE
GLU Q:465 , SER Q:466 , LYS Q:467 , ARG Q:484 , HOH Q:1028
BINDING SITE FOR RESIDUE BCT Q 554
08
AC8
SOFTWARE
HOH A:360 , HOH C:269 , HOH C:270 , ASN Q:181 , HOH Q:1026 , HOH Q:1031
BINDING SITE FOR RESIDUE MG Q 555
09
AC9
SOFTWARE
ASP Q:88 , ILE Q:95 , ARG Q:103 , HOH Q:699 , HOH Q:1025 , HOH Q:1027
BINDING SITE FOR RESIDUE MG Q 556
10
AS1
AUTHOR
CYS Q:72 , CYS Q:75 , CYS Q:543 , CYS Q:546 , FCO Q:550 , NI Q:551
NI-FE ACTIVE SITE IN MOLECULE 1 SITE
11
AS2
AUTHOR
CYS R:72 , CYS R:75 , CYS R:543 , CYS R:546 , FCO R:550 , NI R:551
NI-FE ACTIVE SITE IN MOLECULE 2 SITE
12
AS3
AUTHOR
CYS S:72 , CYS S:75 , CYS S:543 , CYS S:546 , FCO S:550 , NI S:551
NI-FE ACTIVE SITE IN MOLECULE 3 SITE
13
BC1
SOFTWARE
HOH B:1626 , ASN R:181 , HOH R:1628 , HOH R:1676
BINDING SITE FOR RESIDUE MG R 1308
14
BC2
SOFTWARE
HIS A:184 , CYS A:187 , ARG A:189 , LEU A:190 , CYS A:212 , LEU A:213 , CYS A:218
BINDING SITE FOR RESIDUE SF4 A 265
15
BC3
SOFTWARE
ASN A:225 , CYS A:227 , PHE A:232 , TRP A:237 , CYS A:245 , LEU A:246 , CYS A:248 , GLN Q:230
BINDING SITE FOR RESIDUE F3S A 266
16
BC4
SOFTWARE
GLU A:16 , CYS A:17 , CYS A:20 , GLY A:112 , THR A:113 , CYS A:114 , GLY A:146 , CYS A:147 , PRO A:148 , ARG Q:70 , HIS Q:228
BINDING SITE FOR RESIDUE SF4 A 267
17
BC5
SOFTWARE
CYS Q:75 , VAL Q:78 , HIS Q:79 , ALA Q:474 , PRO Q:475 , ARG Q:476 , LEU Q:479 , VAL Q:497 , PRO Q:498 , ALA Q:499 , CYS Q:546 , NI Q:551 , PER Q:552 , HOH Q:583
BINDING SITE FOR RESIDUE FCO Q 550
18
BC6
SOFTWARE
CYS Q:72 , CYS Q:75 , ARG Q:476 , CYS Q:543 , CYS Q:546 , FCO Q:550 , NI Q:551 , HOH Q:564
BINDING SITE FOR RESIDUE PER Q 552
19
BC7
SOFTWARE
HIS B:184 , CYS B:187 , ARG B:189 , LEU B:190 , CYS B:212 , LEU B:213 , CYS B:218
BINDING SITE FOR RESIDUE SF4 B 265
20
BC8
SOFTWARE
ASN B:225 , CYS B:227 , PHE B:232 , CYS B:245 , LEU B:246 , CYS B:248 , GLN R:230
BINDING SITE FOR RESIDUE F3S B 266
21
BC9
SOFTWARE
GLU B:16 , CYS B:17 , CYS B:20 , THR B:113 , CYS B:114 , GLY B:146 , CYS B:147 , PRO B:148 , ARG R:70 , HIS R:228
BINDING SITE FOR RESIDUE SF4 B 267
22
CC1
SOFTWARE
CYS R:75 , VAL R:78 , HIS R:79 , ALA R:474 , PRO R:475 , ARG R:476 , LEU R:479 , VAL R:497 , PRO R:498 , ALA R:499 , CYS R:546 , NI R:551 , PER R:552 , HOH R:1690
BINDING SITE FOR RESIDUE FCO R 550
23
CC2
SOFTWARE
CYS R:75 , ARG R:476 , CYS R:543 , CYS R:546 , FCO R:550 , NI R:551
BINDING SITE FOR RESIDUE PER R 552
24
CC3
SOFTWARE
HIS C:184 , CYS C:187 , ARG C:189 , LEU C:190 , CYS C:212 , LEU C:213 , CYS C:218
BINDING SITE FOR RESIDUE SF4 C 265
25
CC4
SOFTWARE
THR C:223 , ASN C:225 , CYS C:227 , PHE C:232 , TRP C:237 , CYS C:245 , LEU C:246 , CYS C:248 , GLN S:230
BINDING SITE FOR RESIDUE F3S C 266
26
CC5
SOFTWARE
CYS C:17 , CYS C:20 , THR C:113 , CYS C:114 , GLY C:146 , CYS C:147 , PRO C:148 , ARG S:70 , HIS S:228
BINDING SITE FOR RESIDUE SF4 C 267
27
CC6
SOFTWARE
CYS S:75 , VAL S:78 , HIS S:79 , ALA S:474 , PRO S:475 , ARG S:476 , LEU S:479 , VAL S:497 , PRO S:498 , ALA S:499 , CYS S:546 , NI S:551 , PER S:552 , HOH S:2477
BINDING SITE FOR RESIDUE FCO S 550
28
CC7
SOFTWARE
CYS S:72 , CYS S:75 , ARG S:476 , CYS S:543 , CYS S:546 , FCO S:550 , NI S:551 , HOH S:557
BINDING SITE FOR RESIDUE PER S 552
29
CC8
SOFTWARE
ASP A:168 , LEU A:169 , LYS A:176 , GOL A:269
BINDING SITE FOR RESIDUE GOL A 268
30
CC9
SOFTWARE
LYS A:140 , LEU A:169 , ASP A:170 , GOL A:268
BINDING SITE FOR RESIDUE GOL A 269
31
CT1
AUTHOR
GLU Q:53 , LEU Q:495 , HIS Q:549 , FE2 Q:553 , HOH Q:561 , HOH Q:562 , HOH Q:563
C-TERMINAL METAL SITE IN MOLECULE 1 SITE
32
CT2
AUTHOR
GLU R:53 , LEU R:495 , HIS R:549 , FE2 R:553 , HOH R:554 , HOH R:555 , HOH R:556
C-TERMINAL METAL SITE IN MOLECULE 2 SITE
33
CT3
AUTHOR
GLU S:53 , LEU S:495 , HIS S:549 , FE2 S:553 , HOH S:554 , HOH S:555 , HOH S:556
C-TERMINAL METAL SITE IN MOLECULE 3
34
DC1
SOFTWARE
ARG A:6 , LEU A:37 , ASP A:38 , PHE Q:170 , HOH Q:745
BINDING SITE FOR RESIDUE GOL A 270
35
DC2
SOFTWARE
ARG Q:100 , ASN Q:104 , PHE Q:295 , ALA Q:296 , THR Q:297 , GLU Q:445 , HOH Q:665 , HOH Q:1023 , HOH Q:1030
BINDING SITE FOR RESIDUE GOL Q 557
36
DC3
SOFTWARE
ALA A:55 , PHE C:198 , ASN Q:181 , ALA Q:182 , LEU Q:185 , ARG Q:529 , HOH Q:872 , HOH Q:1031
BINDING SITE FOR RESIDUE GOL Q 558
37
DC4
SOFTWARE
GLY Q:281 , GLY Q:282 , ILE Q:283 , GLY Q:284 , GLY Q:285 , ARG Q:319 , HIS Q:419 , HOH Q:974 , HOH Q:1029
BINDING SITE FOR RESIDUE GOL Q 559
38
DC5
SOFTWARE
LYS Q:245 , LYS Q:337 , TYR Q:338 , ASP Q:366
BINDING SITE FOR RESIDUE GOL Q 560
39
DC6
SOFTWARE
ASN R:181 , ALA R:182 , TYR R:183 , LEU R:185 , ARG R:529 , HOH R:1676
BINDING SITE FOR RESIDUE GOL R 1301
40
DC7
SOFTWARE
ALA B:136 , LEU B:137 , GLY B:138 , GLY R:409 , LYS R:410 , HOH R:1613
BINDING SITE FOR RESIDUE GOL R 1302
41
DC8
SOFTWARE
ARG R:100 , ASN R:104 , PHE R:295 , ALA R:296 , THR R:297 , TRP R:442 , GLU R:445 , HOH R:1438 , HOH R:1578 , HOH R:1632
BINDING SITE FOR RESIDUE GOL R 1303
42
DC9
SOFTWARE
GLY R:281 , GLY R:282 , ILE R:283 , GLY R:284 , GLY R:285 , ARG R:319 , HIS R:419 , HOH R:1576
BINDING SITE FOR RESIDUE GOL R 1304
43
EC1
SOFTWARE
THR R:286 , SER R:287 , ASN R:288 , ALA R:380 , PRO R:514 , HOH R:1373 , HOH R:1415
BINDING SITE FOR RESIDUE GOL R 1305
44
EC2
SOFTWARE
ARG R:152 , PRO R:153 , ASN R:155 , SER R:156 , HOH R:1444 , HOH R:1472 , ALA S:451 , GOL S:2302
BINDING SITE FOR RESIDUE GOL R 1306
45
EC3
SOFTWARE
GLU R:465 , LYS R:467 , ARG R:484 , HOH R:1646 , HOH R:1721
BINDING SITE FOR RESIDUE GOL R 1307
46
EC4
SOFTWARE
ARG S:100 , ASN S:104 , PHE S:295 , ALA S:296 , THR S:297 , GLU S:445 , HOH S:2405 , HOH S:2581 , HOH S:2593
BINDING SITE FOR RESIDUE GOL S 2301
47
EC5
SOFTWARE
GOL R:1306 , GLY S:450 , ALA S:451 , LYS S:452 , ASP S:453 , ASN S:454 , HOH S:2544
BINDING SITE FOR RESIDUE GOL S 2302
48
EC6
SOFTWARE
VAL C:235 , SER S:217 , ASN S:250 , HOH S:2524
BINDING SITE FOR RESIDUE GOL S 2303
49
FD1
AUTHOR
HIS A:184 , CYS A:187 , CYS A:212 , CYS A:218 , SF4 A:265
DISTAL [4FE-4S] CLUSTER IN MOLECULE 1 SITE
50
FD2
AUTHOR
HIS B:184 , CYS B:187 , CYS B:212 , CYS B:218 , SF4 B:265
DISTAL [4FE-4S] CLUSTER IN MOLECULE 2 SITE
51
FD3
AUTHOR
HIS C:184 , CYS C:187 , CYS C:212 , CYS C:218 , SF4 C:265
DISTAL [4FE-4S] CLUSTER IN MOLECULE 3 SITE
52
FM1
AUTHOR
CYS A:227 , CYS A:245 , CYS A:248 , F3S A:266
[3FE-4S] CLUSTER IN MOLECULE 1 SITE
53
FM2
AUTHOR
CYS B:227 , CYS B:245 , CYS B:248 , F3S B:266
[3FE-4S] CLUSTER IN MOLECULE 2 SITE
54
FM3
AUTHOR
CYS C:227 , CYS C:245 , CYS C:248 , F3S C:266
[3FE-4S] CLUSTER IN MOLECULE 3 SITE
55
FP1
AUTHOR
CYS A:17 , CYS A:20 , CYS A:114 , CYS A:147 , SF4 A:267
PROXIMAL [4FE-4S] CLUSTER IN MOLECULE 1 SITE
56
FP2
AUTHOR
CYS B:17 , CYS B:20 , CYS B:114 , CYS B:147 , SF4 B:267
PROXIMAL [4FE-4S] CLUSTER IN MOLECULE 2 SITE
57
FP3
AUTHOR
CYS C:17 , CYS C:20 , CYS C:114 , CYS C:147 , SF4 C:267
PROXIMAL [4FE-4S] CLUSTER IN MOLECULE 3 SITE
58
PO1
AUTHOR
NI Q:551 , FCO Q:550 , PER Q:552
ACTIVE SITE BOUND PEROXIDE IN MOLECULE 1 SITE
59
PO2
AUTHOR
NI R:551 , FCO R:550 , PER R:552
ACTIVE SITE BOUND PEROXIDE IN MOLECULE 2 SITE
60
PO3
AUTHOR
NI S:551 , FCO S:550 , PER S:552
ACTIVE SITE BOUND PEROXIDE IN MOLECULE 3 SITE
61
SO1
AUTHOR
CYS Q:75 , NI Q:551 , HOH Q:564
NIFE-BOUND SULPHENIC ACID IN MOLECULE 1 SITE
62
SO2
AUTHOR
CYS R:75 , NI R:551 , HOH R:557
NIFE-BOUND SULPHENIC ACID IN MOLECULE 2 SITE
63
SO3
AUTHOR
CYS S:75 , NI S:551 , HOH S:557
NIFE-BOUND SULPHENIC ACID IN MOLECULE 3 SITE
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: NI_HGENASE_L_1 (Q:50-75,R:50-75,S:50-75)
2: NI_HGENASE_L_2 (Q:540-549,R:540-549,S:540-549)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NI_HGENASE_L_1
PS00507
Nickel-dependent hydrogenases large subunit signature 1.
PHNL_DESFR
50-75
3
Q:50-75
R:50-75
S:50-75
2
NI_HGENASE_L_2
PS00508
Nickel-dependent hydrogenases large subunit signature 2.
PHNL_DESFR
540-549
3
Q:540-549
R:540-549
S:540-549
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1yqwa_ (A:)
1b: SCOP_d1yqwb_ (B:)
1c: SCOP_d1yqwc_ (C:)
2a: SCOP_d1yqwq_ (Q:)
2b: SCOP_d1yqwr_ (R:)
2c: SCOP_d1yqws_ (S:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
HydA/Nqo6-like
(51)
Superfamily
:
HydA/Nqo6-like
(51)
Family
:
Nickel-iron hydrogenase, small subunit
(39)
Protein domain
:
automated matches
(23)
Desulfovibrio fructosovorans [TaxId: 878]
(5)
1a
d1yqwa_
A:
1b
d1yqwb_
B:
1c
d1yqwc_
C:
Fold
:
HydB/Nqo4-like
(55)
Superfamily
:
HydB/Nqo4-like
(55)
Family
:
Nickel-iron hydrogenase, large subunit
(40)
Protein domain
:
automated matches
(23)
Desulfovibrio fructosovorans [TaxId: 878]
(5)
2a
d1yqwq_
Q:
2b
d1yqwr_
R:
2c
d1yqws_
S:
[
close SCOP info
]
CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1yqwA01 (A:3-178)
1b: CATH_1yqwB01 (B:3-178)
1c: CATH_1yqwC01 (C:5-178)
2a: CATH_1yqwA02 (A:179-263)
2b: CATH_1yqwB02 (B:179-263)
2c: CATH_1yqwC02 (C:179-263)
3a: CATH_1yqwQ00 (Q:6-549)
3b: CATH_1yqwS00 (S:6-549)
3c: CATH_1yqwR00 (R:5-549)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.700, no name defined]
(28)
Desulfovibrio fructosovorans. Organism_taxid: 878. Strain: wild type.
(5)
1a
1yqwA01
A:3-178
1b
1yqwB01
B:3-178
1c
1yqwC01
C:5-178
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Cytochrome-c3 Hydrogenase; Chain A, domain 2
(28)
Homologous Superfamily
:
Cytochrome-c3 Hydrogenase, chain A, domain 2
(28)
Desulfovibrio fructosovorans. Organism_taxid: 878. Strain: wild type.
(5)
2a
1yqwA02
A:179-263
2b
1yqwB02
B:179-263
2c
1yqwC02
C:179-263
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome-c3 Hydrogenase; chain B
(28)
Homologous Superfamily
:
Cytochrome-c3 Hydrogenase, chain B
(28)
Desulfovibrio fructosovorans. Organism_taxid: 878. Strain: wild type.
(5)
3a
1yqwQ00
Q:6-549
3b
1yqwS00
S:6-549
3c
1yqwR00
R:5-549
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_NiFeSe_Hases_1yqwS01 (S:50-549)
1b: PFAM_NiFeSe_Hases_1yqwS02 (S:50-549)
1c: PFAM_NiFeSe_Hases_1yqwS03 (S:50-549)
2a: PFAM_Oxidored_q6_1yqwC01 (C:17-161)
2b: PFAM_Oxidored_q6_1yqwC02 (C:17-161)
2c: PFAM_Oxidored_q6_1yqwC03 (C:17-161)
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Clan
:
no clan defined [family: NiFeSe_Hases]
(17)
Family
:
NiFeSe_Hases
(17)
Desulfovibrio fructosovorans
(2)
1a
NiFeSe_Hases-1yqwS01
S:50-549
1b
NiFeSe_Hases-1yqwS02
S:50-549
1c
NiFeSe_Hases-1yqwS03
S:50-549
Clan
:
no clan defined [family: Oxidored_q6]
(18)
Family
:
Oxidored_q6
(18)
Desulfovibrio fructosovorans
(2)
2a
Oxidored_q6-1yqwC01
C:17-161
2b
Oxidored_q6-1yqwC02
C:17-161
2c
Oxidored_q6-1yqwC03
C:17-161
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