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1YPO
Biol. Unit 4
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Asym.Unit (174 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (45 KB)
Biol.Unit 3 (44 KB)
Biol.Unit 4 (45 KB)
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(1)
Title
:
HUMAN OXIDIZED LOW DENSITY LIPOPROTEIN RECEPTOR LOX-1 P3 1 21 SPACE GROUP
Authors
:
H. Park, F. G. Adsit, J. C. Boyington
Date
:
31 Jan 05 (Deposition) - 08 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Oxidized Low Density Lipoprotein Receptor, Lox-1, Ctld, C- Type Lectin Like Domain, Nk Cell Receptor, Immune System
(Keyword Search:
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Reference
:
H. Park, F. G. Adsit, J. C. Boyington
The 1. 4 Angstrom Crystal Structure Of The Human Oxidized Low Density Lipoprotein Receptor Lox-1.
J. Biol. Chem. V. 280 13593 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 2)
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(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_023200 (K167N, chain G/H, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023200
K
167
N
OLR1_HUMAN
Polymorphism
11053646
G/H
K
167
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (G:151-265,H:151-265)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
OLR1_HUMAN
151-265
2
-
-
-
-
-
-
G:151-265
H:151-265
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1ypoa_ (A:)
1b: SCOP_d1ypob_ (B:)
1c: SCOP_d1ypoc_ (C:)
1d: SCOP_d1ypod_ (D:)
1e: SCOP_d1ypoe_ (E:)
1f: SCOP_d1ypof_ (F:)
1g: SCOP_d1ypog_ (G:)
1h: SCOP_d1ypoh_ (H:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Human (Homo sapiens) [TaxId: 9606]
(60)
1a
d1ypoa_
A:
1b
d1ypob_
B:
1c
d1ypoc_
C:
1d
d1ypod_
D:
1e
d1ypoe_
E:
1f
d1ypof_
F:
1g
d1ypog_
G:
1h
d1ypoh_
H:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1ypoB00 (B:141-272)
1b: CATH_1ypoG00 (G:141-272)
1c: CATH_1ypoA00 (A:142-271)
1d: CATH_1ypoF00 (F:141-270)
1e: CATH_1ypoD00 (D:142-270)
1f: CATH_1ypoE00 (E:142-270)
1g: CATH_1ypoH00 (H:142-270)
1h: CATH_1ypoC00 (C:141-272)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
1ypoB00
B:141-272
1b
1ypoG00
G:141-272
1c
1ypoA00
A:142-271
1d
1ypoF00
F:141-270
1e
1ypoD00
D:142-270
1f
1ypoE00
E:142-270
1g
1ypoH00
H:142-270
1h
1ypoC00
C:141-272
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Lectin_C_1ypoH01 (H:161-266)
1b: PFAM_Lectin_C_1ypoH02 (H:161-266)
1c: PFAM_Lectin_C_1ypoH03 (H:161-266)
1d: PFAM_Lectin_C_1ypoH04 (H:161-266)
1e: PFAM_Lectin_C_1ypoH05 (H:161-266)
1f: PFAM_Lectin_C_1ypoH06 (H:161-266)
1g: PFAM_Lectin_C_1ypoH07 (H:161-266)
1h: PFAM_Lectin_C_1ypoH08 (H:161-266)
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)
Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Homo sapiens (Human)
(39)
1a
Lectin_C-1ypoH01
H:161-266
1b
Lectin_C-1ypoH02
H:161-266
1c
Lectin_C-1ypoH03
H:161-266
1d
Lectin_C-1ypoH04
H:161-266
1e
Lectin_C-1ypoH05
H:161-266
1f
Lectin_C-1ypoH06
H:161-266
1g
Lectin_C-1ypoH07
H:161-266
1h
Lectin_C-1ypoH08
H:161-266
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Asym.Unit (174 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (45 KB)
Header - Biol.Unit 2
Biol.Unit 3 (44 KB)
Header - Biol.Unit 3
Biol.Unit 4 (45 KB)
Header - Biol.Unit 4
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