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Asym. Unit
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Asym.Unit (47 KB)
Biol.Unit 1 (42 KB)
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(1)
Title
:
HUMAN STEROIDOGENIC FACTOR 1 LBD WITH BOUND CO-FACTOR PEPTIDE
Authors
:
I. N. Krylova, E. P. Sablin, R. X. Xu, G. M. Waitt, D. Juzumiene, J. D. Williams, H. A. Ingraham, T. M. Willson, S. P. Williams, V. Montana, K. P. Madauss, J. Moore, J. M. Bynum, L. Lebedeva, J. A. Mackay, M. Suzawa, R. K. Guy, J. W. Thornton
Date
:
28 Jan 05 (Deposition) - 10 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Steroidogenic Factor 1, Sf1, Phospholipid, Phosphatidyl Ethanolamine, Phosphatidyl Glycerol, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. N. Krylova, E. P. Sablin, R. X. Xu, G. M. Waitt, J. A. Mackay, D. Juzumiene, J. M. Bynum, K. P. Madauss, V. Montana, L. Lebedeva, M. Suzawa, J. D. Williams, S. P. Williams, R. K. Guy, J. W. Thornton, R. J. Fletterick, T. M. Willson, H. A. Ingraham
Structural Analyses Reveal Phosphatidyl Inositols As Ligands For The Nr5 Orphan Receptors Sf-1 And Lrh-1
Cell(Cambridge, Mass. ) V. 120 343 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHATIDYL ETHANOL (P0Ea)
View:
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Label:
No.
Name
Count
Type
Full Name
1
P0E
1
Ligand/Ion
PHOSPHATIDYL ETHANOL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:262 , LEU A:265 , SER A:303 , LEU A:306 , VAL A:307 , HIS A:310 , ILE A:323 , VAL A:331 , THR A:335 , VAL A:336 , GLN A:339 , ALA A:340 , GLY A:341 , LEU A:344 , ALA A:351 , SER A:430 , ALA A:433 , TYR A:436 , LYS A:440
BINDING SITE FOR RESIDUE P0E A 201
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_065869 (D238N, chain A, )
2: VAR_062970 (D293N, chain A, )
3: VAR_063258 (L437Q, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_065869
D
238
N
STF1_HUMAN
Disease (SPGF8)
---
A
D
238
N
2
UniProt
VAR_062970
D
293
N
STF1_HUMAN
Disease (POF7)
---
A
D
293
N
3
UniProt
VAR_063258
L
437
Q
STF1_HUMAN
Disease (SRXY3)
---
A
L
437
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.6b (A:221-290 (gaps))
Exon 1.7 (A:291-330)
Exon 1.8 (A:331-380)
Exon 1.9b (A:380-458)
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All Exon Boundaries
1: Boundary 1.4/1.6b
2: Boundary 1.6b/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9b
5: Boundary 1.9b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000373588
1
ENSE00001460970
chr9:
127269709-127269528
182
STF1_HUMAN
-
0
0
-
-
1.3
ENST00000373588
3
ENSE00001460969
chr9:
127265689-127265573
117
STF1_HUMAN
1-34
34
0
-
-
1.4
ENST00000373588
4
ENSE00000726938
chr9:
127265499-127265358
142
STF1_HUMAN
35-82
48
0
-
-
1.6b
ENST00000373588
6b
ENSE00000726937
chr9:
127262994-127262369
626
STF1_HUMAN
82-290
209
1
A:221-290 (gaps)
70
1.7
ENST00000373588
7
ENSE00000726936
chr9:
127255428-127255309
120
STF1_HUMAN
291-330
40
1
A:291-330
40
1.8
ENST00000373588
8
ENSE00000726934
chr9:
127253507-127253360
148
STF1_HUMAN
331-380
50
1
A:331-380
50
1.9b
ENST00000373588
9b
ENSE00001230484
chr9:
127245284-127243516
1769
STF1_HUMAN
380-461
82
1
A:380-458
79
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SCOP Domains
(0, 0)
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1yowA00 (A:221-458)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1yowA00
A:221-458
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1yowA01 (A:249-455)
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Clans
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(
)
Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1yowA01
A:249-455
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