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1YNL
Biol. Unit 1
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Asym.Unit (81 KB)
Biol.Unit 1 (76 KB)
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(1)
Title
:
IDENTIFICATION OF KEY RESIDUES OF THE NC6.8 FAB ANTIBODY FRAGMENT BINDING TO SYNTHETIC SWEETERNERS: CRYSTAL STRUCTURE OF NC6.8 CO-CRYSTALIZED WITH HIGH POTENCY SWEETENER COMPOUND SC45647
Authors
:
K. Gokulan, S. Khare, D. R. Ronning, S. D. Linthicum, J. C. Sacchettini,
Date
:
24 Jan 05 (Deposition) - 16 Aug 05 (Release) - 19 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : H,L
Biol. Unit 1: H,L (1x)
Keywords
:
Triethyl Aminomethane Sulfonyl Acid, Sweetener Compound, Sc45647 And Nc174, Immune System
(Keyword Search:
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Reference
:
K. Gokulan, S. Khare, D. R. Ronning, S. D. Linthicum, J. C. Sacchettini B. Rupp
Cocrystal Structures Of Nc6. 8 Fab Identify Key Interactions For High Potency Sweetener Recognition: Implications For Th Design Of Synthetic Sweeteners
Biochemistry V. 44 9889 2005
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Hetero Components
(1, 1)
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All Hetero Components
1a: 2-(2-HYDROXY-1,1-DIHYDROXYMETHYL-E... (NESa)
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1
NES
1
Ligand/Ion
2-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-ETHANESULFONIC ACID
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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Description
1
AC1
SOFTWARE
TYR H:96 , SER H:97 , SER H:98 , HIS L:27D , TYR L:32 , HIS L:34 , GLY L:91 , THR L:92 , TYR L:96 , HOH L:543 , HOH L:693 , HOH L:694 , HOH L:695 , HOH L:696
BINDING SITE FOR RESIDUE NES L 501
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SAPs(SNPs)/Variants
(0, 0)
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SCOP Domains
(2, 2)
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All SCOP Domains
1a: SCOP_d1ynll2 (L:108-214)
2a: SCOP_d1ynll1 (L:1-107)
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Class
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All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
1a
d1ynll2
L:108-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
(131)
2a
d1ynll1
L:1-107
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ynlL02 (L:109-211)
1b: CATH_1ynlH02 (H:113-215)
1c: CATH_1ynlL01 (L:1-108)
1d: CATH_1ynlH01 (H:1-112)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1ynlL02
L:109-211
1b
1ynlH02
H:113-215
1c
1ynlL01
L:1-108
1d
1ynlH01
H:1-112
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Pfam Domains
(2, 2)
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all PFAM domains
1a: PFAM_C1_set_1ynlH01 (H:125-206)
2a: PFAM_V_set_1ynlH02 (H:2-110)
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Clan
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Ig
(577)
Family
:
C1-set
(338)
Mus musculus (Mouse)
(118)
1a
C1-set-1ynlH01
H:125-206
Family
:
V-set
(144)
Mus musculus (Mouse)
(63)
2a
V-set-1ynlH02
H:2-110
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Asymmetric Unit 1
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Asym.Unit (81 KB)
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