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1YN8
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (14 KB)
Biol.Unit 2 (13 KB)
Biol.Unit 3 (13 KB)
Biol.Unit 4 (14 KB)
Biol.Unit 5 (14 KB)
Biol.Unit 6 (13 KB)
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(1)
Title
:
SH3 DOMAIN OF YEAST NBP2
Authors
:
P. Kursula, I. Kursula, Y. H. Song, M. Wilmanns
Date
:
24 Jan 05 (Deposition) - 30 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Sh3 Domain, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kursula, I. Kursula, P. Zou, F. Lehmann, Y. H. Song, M. Wilmanns
Structural Analysis Of The Yeast Sh3 Domain Proteome
To Be Published
[
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
10
Ligand/Ion
CALCIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:53 , HOH B:1018 , HOH B:1052 , HOH B:1065 , HOH E:1051 , HOH E:1066 , HOH E:1096
BINDING SITE FOR RESIDUE CA B 1003
02
AC2
SOFTWARE
GLU B:22 , HOH B:1026 , HOH B:1041 , HOH B:1077 , GLU E:13 , CA E:1005 , HOH E:1031 , HOH E:1052 , HOH E:1074
BINDING SITE FOR RESIDUE CA B 1004
03
AC3
SOFTWARE
GLU B:13 , HOH B:1027 , HOH B:1050 , HOH B:1087
BINDING SITE FOR RESIDUE CA B 1007
04
AC4
SOFTWARE
GLU B:13 , HOH B:1087 , HOH E:1094
BINDING SITE FOR RESIDUE CA B 1008
05
AC5
SOFTWARE
TYR B:57 , HOH B:1083 , HOH B:1084 , GLU C:53 , HOH C:1068 , HOH C:1069
BINDING SITE FOR RESIDUE CA C 1001
06
AC6
SOFTWARE
GLU D:13 , CA D:1009 , HOH D:1051 , HOH D:1066 , GLU F:22
BINDING SITE FOR RESIDUE CA D 1006
07
AC7
SOFTWARE
GLU D:13 , CA D:1006 , HOH D:1066 , HOH D:1081 , GLU F:22 , HOH F:109
BINDING SITE FOR RESIDUE CA D 1009
08
AC8
SOFTWARE
GLU D:22 , GLU F:13
BINDING SITE FOR RESIDUE CA D 1010
09
AC9
SOFTWARE
ASP E:24 , HOH E:1086 , HOH E:1087 , HOH E:1088 , HOH E:1089 , HOH E:1090 , HOH E:1091 , HOH E:1092
BINDING SITE FOR RESIDUE CA E 1002
10
BC1
SOFTWARE
GLU B:22 , CA B:1004 , HOH B:1047 , GLU E:13 , HOH E:1052 , HOH E:1062 , HOH E:1065
BINDING SITE FOR RESIDUE CA E 1005
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(1, 6)
Info
All Exons
Exon 1.1 (A:1-59 | B:1-59 | C:1-59 | D:1-59 ...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR162C
1
YDR162C.1
IV:781098-780388
711
NBP2_YEAST
1-236
236
6
A:1-59
B:1-59
C:1-59
D:1-59
E:1-59
F:1-59
59
59
59
59
59
59
[
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1yn8a_ (A:)
1b: SCOP_d1yn8b_ (B:)
1c: SCOP_d1yn8c_ (C:)
1d: SCOP_d1yn8d_ (D:)
1e: SCOP_d1yn8e_ (E:)
1f: SCOP_d1yn8f_ (F:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
automated matches
(114)
Protein domain
:
automated matches
(114)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(12)
1a
d1yn8a_
A:
1b
d1yn8b_
B:
1c
d1yn8c_
C:
1d
d1yn8d_
D:
1e
d1yn8e_
E:
1f
d1yn8f_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1yn8A00 (A:1-59)
1b: CATH_1yn8B00 (B:1-59)
1c: CATH_1yn8C00 (C:1-59)
1d: CATH_1yn8D00 (D:1-59)
1e: CATH_1yn8E00 (E:1-59)
1f: CATH_1yn8F00 (F:1-59)
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)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Baker's yeast (Saccharomyces cerevisiae)
(21)
1a
1yn8A00
A:1-59
1b
1yn8B00
B:1-59
1c
1yn8C00
C:1-59
1d
1yn8D00
D:1-59
1e
1yn8E00
E:1-59
1f
1yn8F00
F:1-59
[
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_SH3_1_1yn8F01 (F:5-52)
1b: PFAM_SH3_1_1yn8F02 (F:5-52)
1c: PFAM_SH3_1_1yn8F03 (F:5-52)
1d: PFAM_SH3_1_1yn8F04 (F:5-52)
1e: PFAM_SH3_1_1yn8F05 (F:5-52)
1f: PFAM_SH3_1_1yn8F06 (F:5-52)
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Clans
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Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(24)
1a
SH3_1-1yn8F01
F:5-52
1b
SH3_1-1yn8F02
F:5-52
1c
SH3_1-1yn8F03
F:5-52
1d
SH3_1-1yn8F04
F:5-52
1e
SH3_1-1yn8F05
F:5-52
1f
SH3_1-1yn8F06
F:5-52
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (77 KB)
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Biol.Unit 2 (13 KB)
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Biol.Unit 3 (13 KB)
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Biol.Unit 4 (14 KB)
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