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1YMP
Asym. Unit
Info
Asym.Unit (48 KB)
Biol.Unit 1 (22 KB)
Biol.Unit 2 (22 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF A PARTIAL MOUSE NOTCH-1 ANKYRIN DOMAIN: REPEATS 4 THROUGH 7 PRESERVE AN ANKYRIN FOLD
Authors
:
O. Y. Lubman, R. Kopan, G. Waksman, S. Korolev
Date
:
21 Jan 05 (Deposition) - 10 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ankyrin Repeats, Helix-Turn-Helix, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
O. Y. Lubman, R. Kopan, G. Waksman, S. Korolev
The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold.
Protein Sci. V. 14 1274 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ANK_REPEAT (-|A:117-149,B:117-149|A:150-182,B:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REPEAT
PS50088
Ankyrin repeat profile.
NOTC1_MOUSE
1917-1949
1984-2016
2017-2049
2050-2082
6
-
A:117-149
B:117-149
A:150-182
B:150-182
A:183-215
B:183-215
NOTC1_RAT
1917-1949
1984-2016
2017-2049
2050-2082
6
-
A:117-149
B:117-149
A:150-182
B:150-182
A:183-215
B:183-215
[
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Exons
(3, 6)
Info
All Exons
Exon 1.31 (A:107-131 | B:107-131)
Exon 1.32 (A:131-163 | B:131-163)
Exon 1.33 (A:164-237 | B:164-237)
View:
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All Exon Boundaries
1: Boundary 1.30/1.31
2: Boundary 1.31/1.32
3: Boundary 1.32/1.33
4: Boundary 1.33/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000026212
1
ENSRNOE00000458008
chr3:
4675880-4675800
81
NOTC1_RAT
1-27
27
0
-
-
1.2
ENSRNOT00000026212
2
ENSRNOE00000187441
chr3:
4659034-4658772
263
NOTC1_RAT
27-115
89
0
-
-
1.3
ENSRNOT00000026212
3
ENSRNOE00000187455
chr3:
4658196-4657858
339
NOTC1_RAT
115-228
114
0
-
-
1.4
ENSRNOT00000026212
4
ENSRNOE00000187470
chr3:
4655387-4655265
123
NOTC1_RAT
228-269
42
0
-
-
1.5
ENSRNOT00000026212
5
ENSRNOE00000187485
chr3:
4654823-4654590
234
NOTC1_RAT
269-347
79
0
-
-
1.6
ENSRNOT00000026212
6
ENSRNOE00000187503
chr3:
4654057-4653902
156
NOTC1_RAT
347-399
53
0
-
-
1.7
ENSRNOT00000026212
7
ENSRNOE00000187522
chr3:
4653737-4653552
186
NOTC1_RAT
399-461
63
0
-
-
1.8
ENSRNOT00000026212
8
ENSRNOE00000187538
chr3:
4653236-4653123
114
NOTC1_RAT
461-499
39
0
-
-
1.9
ENSRNOT00000026212
9
ENSRNOE00000187555
chr3:
4652424-4652311
114
NOTC1_RAT
499-537
39
0
-
-
1.10
ENSRNOT00000026212
10
ENSRNOE00000187578
chr3:
4652016-4651783
234
NOTC1_RAT
537-615
79
0
-
-
1.11
ENSRNOT00000026212
11
ENSRNOE00000187594
chr3:
4651703-4651593
111
NOTC1_RAT
615-652
38
0
-
-
1.12
ENSRNOT00000026212
12
ENSRNOE00000187602
chr3:
4650838-4650646
193
NOTC1_RAT
652-716
65
0
-
-
1.13
ENSRNOT00000026212
13
ENSRNOE00000187620
chr3:
4650199-4650054
146
NOTC1_RAT
716-765
50
0
-
-
1.14
ENSRNOT00000026212
14
ENSRNOE00000187633
chr3:
4649865-4649752
114
NOTC1_RAT
765-803
39
0
-
-
1.15b
ENSRNOT00000026212
15b
ENSRNOE00000187647
chr3:
4647907-4647788
120
NOTC1_RAT
803-843
41
0
-
-
1.16
ENSRNOT00000026212
16
ENSRNOE00000187653
chr3:
4647505-4647353
153
NOTC1_RAT
843-894
52
0
-
-
1.17
ENSRNOT00000026212
17
ENSRNOE00000187658
chr3:
4646691-4646463
229
NOTC1_RAT
894-970
77
0
-
-
1.18
ENSRNOT00000026212
18
ENSRNOE00000187665
chr3:
4645966-4645765
202
NOTC1_RAT
970-1037
68
0
-
-
1.19
ENSRNOT00000026212
19
ENSRNOE00000187669
chr3:
4645031-4644878
154
NOTC1_RAT
1038-1089
52
0
-
-
1.20
ENSRNOT00000026212
20
ENSRNOE00000187689
chr3:
4644746-4644562
185
NOTC1_RAT
1089-1150
62
0
-
-
1.21
ENSRNOT00000026212
21
ENSRNOE00000187695
chr3:
4644145-4644013
133
NOTC1_RAT
1151-1195
45
0
-
-
1.22
ENSRNOT00000026212
22
ENSRNOE00000187715
chr3:
4643765-4643508
258
NOTC1_RAT
1195-1281
87
0
-
-
1.23b
ENSRNOT00000026212
23b
ENSRNOE00000187731
chr3:
4643428-4643316
113
NOTC1_RAT
1281-1318
38
0
-
-
1.24a
ENSRNOT00000026212
24a
ENSRNOE00000187738
chr3:
4642527-4641956
572
NOTC1_RAT
1319-1509
191
0
-
-
1.25b
ENSRNOT00000026212
25b
ENSRNOE00000187757
chr3:
4641764-4641363
402
NOTC1_RAT
1509-1643
135
0
-
-
1.26
ENSRNOT00000026212
26
ENSRNOE00000187774
chr3:
4640523-4640375
149
NOTC1_RAT
1643-1693
51
0
-
-
1.27
ENSRNOT00000026212
27
ENSRNOE00000187809
chr3:
4639405-4639189
217
NOTC1_RAT
1693-1765
73
0
-
-
1.28
ENSRNOT00000026212
28
ENSRNOE00000187830
chr3:
4638997-4638910
88
NOTC1_RAT
1765-1794
30
0
-
-
1.29a
ENSRNOT00000026212
29a
ENSRNOE00000187847
chr3:
4638819-4638654
166
NOTC1_RAT
1795-1850
56
0
-
-
1.30
ENSRNOT00000026212
30
ENSRNOE00000187871
chr3:
4637852-4637557
296
NOTC1_RAT
1850-1948
99
0
-
-
1.31
ENSRNOT00000026212
31
ENSRNOE00000187909
chr3:
4636337-4636190
148
NOTC1_RAT
1949-1998
50
2
A:107-131
B:107-131
25
25
1.32
ENSRNOT00000026212
32
ENSRNOE00000187943
chr3:
4636092-4635995
98
NOTC1_RAT
1998-2030
33
2
A:131-163
B:131-163
33
33
1.33
ENSRNOT00000026212
33
ENSRNOE00000416857
chr3:
4634827-4631808
3020
NOTC1_RAT
2031-2511
481
2
A:164-237
B:164-237
74
74
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ympa_ (A:)
1b: SCOP_d1ympb_ (B:)
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Classes
(
)
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)
Folds
(
)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-hairpin-alpha-hairpin repeat
(81)
Superfamily
:
Ankyrin repeat
(79)
Family
:
Ankyrin repeat
(60)
Protein domain
:
automated matches
(22)
Mouse (Mus musculus) [TaxId: 10090]
(3)
1a
d1ympa_
A:
1b
d1ympb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ympA00 (A:107-237)
1b: CATH_1ympB00 (B:107-237)
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Classes
(
)
(
)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
House mouse (Mus musculus)
(9)
1a
1ympA00
A:107-237
1b
1ympB00
B:107-237
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Ank_2_1ympB01 (B:107-180)
1b: PFAM_Ank_2_1ympB02 (B:107-180)
1c: PFAM_Ank_2_1ympB03 (B:107-180)
1d: PFAM_Ank_2_1ympB04 (B:107-180)
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Clans
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(
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(
)
Organisms
(
)
(
)
Clan
:
Ank
(35)
Family
:
Ank_2
(14)
Mus musculus (Mouse)
(3)
1a
Ank_2-1ympB01
B:107-180
1b
Ank_2-1ympB02
B:107-180
1c
Ank_2-1ympB03
B:107-180
1d
Ank_2-1ympB04
B:107-180
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