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1YLJ
Asym. Unit
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Asym.Unit (112 KB)
Biol.Unit 1 (108 KB)
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(1)
Title
:
ATOMIC RESOLUTION STRUCTURE OF CTX-M-9 BETA-LACTAMASE
Authors
:
Y. Chen, J. Delmas, J. Sirot, B. Shoichet, R. Bonnet
Date
:
19 Jan 05 (Deposition) - 19 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.98
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ctx-M, Beta-Lactamase, Anisotropy, Extended-Spectrum, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Chen, J. Delmas, J. Sirot, B. Shoichet, R. Bonnet
Atomic Resolution Structures Of Ctx-M Beta-Lactamases: Extended Spectrum Activities From Increased Mobility And Decreased Stability.
J. Mol. Biol. V. 348 349 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
2a: SUCROSE (SUCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
10
Ligand/Ion
SULFATE ION
2
SUC
1
Ligand/Ion
SUCROSE
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:100 , ASP A:101 , ASN A:136 , LYS A:137 , ALA A:140 , THR A:165 , SO4 A:1008 , HOH A:2001 , HOH A:2044 , HOH A:2088 , HOH A:2212 , HOH A:2363 , HOH A:2394 , HOH A:2428 , HOH A:2448 , HOH A:2473
BINDING SITE FOR RESIDUE SUC A 1050
02
AC2
SOFTWARE
ARG A:153 , ARG A:191 , HIS A:197 , HOH A:2081 , HOH A:2103 , HOH A:2151 , HOH A:2342 , HOH A:2365 , HOH A:2421
BINDING SITE FOR RESIDUE SO4 A 1001
03
AC3
SOFTWARE
SER A:70 , SER A:130 , LYS A:234 , THR A:235 , GLY A:236 , SER A:237 , HOH A:2017 , HOH A:2018 , HOH A:2122 , HOH A:2226 , HOH A:2303 , HOH A:2438
BINDING SITE FOR RESIDUE SO4 A 1002
04
AC4
SOFTWARE
ARG A:161 , GLN A:188 , GLN A:192 , HOH A:2037 , HOH A:2076 , HOH A:2138 , HOH A:2155 , HOH A:2210 , HOH A:2225 , HOH A:2324 , HOH A:2375
BINDING SITE FOR RESIDUE SO4 A 1003
05
AC5
SOFTWARE
ARG A:184 , GLN A:188 , HOH A:2012 , HOH A:2106 , HOH A:2180 , HOH A:2219 , HOH A:2225 , HOH A:2248 , HOH A:2374 , HOH A:2432
BINDING SITE FOR RESIDUE SO4 A 1004
06
AC6
SOFTWARE
LYS A:88 , ARG A:178 , THR A:202 , GLN A:203 , HOH A:2063 , HOH A:2128 , HOH A:2397 , HOH A:2479
BINDING SITE FOR RESIDUE SO4 A 1005
07
AC7
SOFTWARE
GLY A:143 , GLY A:144 , PRO A:145 , GLY A:146 , HOH A:2296 , HOH A:2402 , HOH A:2419 , HOH A:2466 , HOH A:2475
BINDING SITE FOR RESIDUE SO4 A 1006
08
AC8
SOFTWARE
SER A:274 , ARG A:276 , ASP A:277 , HOH A:2055 , HOH A:2200 , HOH A:2344
BINDING SITE FOR RESIDUE SO4 A 1007
09
AC9
SOFTWARE
ILE A:108 , LYS A:111 , HIS A:112 , GLU A:288 , SUC A:1050 , HOH A:2056 , HOH A:2071 , HOH A:2119 , HOH A:2240 , HOH A:2270 , HOH A:2377 , HOH A:2473
BINDING SITE FOR RESIDUE SO4 A 1008
10
BC1
SOFTWARE
GLN A:25 , THR A:26 , ASN A:271 , HOH A:2084 , HOH A:2113 , HOH A:2326 , HOH A:2336 , HOH A:2339 , HOH A:2371 , HOH A:2381
BINDING SITE FOR RESIDUE SO4 A 1009
11
BC2
SOFTWARE
ARG A:153 , GLU A:158 , HIS A:197 , HOH A:2080 , HOH A:2091 , HOH A:2227 , HOH A:2337 , HOH A:2342
BINDING SITE FOR RESIDUE SO4 A 1010
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ylja_ (A:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
automated matches
(81)
Escherichia coli [TaxId: 562]
(40)
1a
d1ylja_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1yljA00 (A:25-290)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Escherichia coli. Organism_taxid: 562.
(91)
1a
1yljA00
A:25-290
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Beta_lactamase2_1yljA01 (A:51-263)
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Clans
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)
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(
)
Clan
:
Beta-lactamase
(210)
Family
:
Beta-lactamase2
(75)
Escherichia coli
(42)
1a
Beta-lactamase2-1yljA01
A:51-263
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Asymmetric Unit 1
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Asym.Unit (112 KB)
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