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1YLD
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
TRYPSIN/BPTI COMPLEX MUTANT
Authors
:
C. K. Brown, D. H. Ohlendorf
Date
:
19 Jan 05 (Deposition) - 25 Apr 06 (Release) - 20 May 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Bpti, Trypsin, Complex, Hydrolase/Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. V. Getun, C. K. Brown, J. Tulla-Puche, D. Ohlendorf, C. Woodward, G. Barany
Partially Folded Bovine Pancreatic Trypsin Inhibitor Analogues Attain Fully Native Structures When Co-Crystallized With S195A Rat Trypsin
J. Mol. Biol. V. 375 812 2008
(for further references see the
PDB file header
)
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: ALPHA-AMINOBUTYRIC ACID (ABAa)
1b: ALPHA-AMINOBUTYRIC ACID (ABAb)
1c: ALPHA-AMINOBUTYRIC ACID (ABAc)
1d: ALPHA-AMINOBUTYRIC ACID (ABAd)
2a: CALCIUM ION (CAa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ABA
4
Mod. Amino Acid
ALPHA-AMINOBUTYRIC ACID
2
CA
1
Ligand/Ion
CALCIUM ION
3
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:70 , ASN A:72 , VAL A:75 , GLU A:77 , GLU A:80 , HOH A:526
BINDING SITE FOR RESIDUE CA A 800
2
AC2
SOFTWARE
LYS B:41 , ARG B:42 , HOH B:529 , HOH B:664
BINDING SITE FOR RESIDUE SO4 B 990
3
AC3
SOFTWARE
ARG B:20 , TYR B:35 , ALA B:40 , HOH B:639 , HOH B:687 , HOH B:705
BINDING SITE FOR RESIDUE SO4 B 991
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:16-243)
2: BPTI_KUNITZ_2 (B:6-54)
3: TRYPSIN_HIS (A:53-58)
4: BPTI_KUNITZ_1 (B:33-50)
5: TRYPSIN_SER (A:189-200)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
TRY2_RAT
24-244
1
A:16-243
2
BPTI_KUNITZ_2
PS50279
Pancreatic trypsin inhibitor (Kunitz) family profile.
BPT1_BOVIN
40-90
1
B:6-54
3
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
TRY2_RAT
59-64
1
A:53-58
4
BPTI_KUNITZ_1
PS00280
Pancreatic trypsin inhibitor (Kunitz) family signature.
BPT1_BOVIN
68-86
1
B:33-50
5
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
TRY2_RAT
194-205
1
A:189-200
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.2b (A:16-61 (gaps))
Exon 1.3 (A:61-149 (gaps))
Exon 1.4 (A:149-192)
Exon 1.5 (A:193-245 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.1/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000018852
1
ENSRNOE00000331572
chr4:
69088288-69088327
40
TRY2_RAT
1-14
14
0
-
-
1.2b
ENSRNOT00000018852
2b
ENSRNOE00000277233
chr4:
69090744-69090903
160
TRY2_RAT
14-67
54
1
A:16-61 (gaps)
46
1.3
ENSRNOT00000018852
3
ENSRNOE00000105498
chr4:
69092114-69092367
254
TRY2_RAT
67-152
86
1
A:61-149 (gaps)
89
1.4
ENSRNOT00000018852
4
ENSRNOE00000338303
chr4:
69092772-69092908
137
TRY2_RAT
152-197
46
1
A:149-192
46
1.5
ENSRNOT00000018852
5
ENSRNOE00000134316
chr4:
69093163-69093367
205
TRY2_RAT
198-246
49
1
A:193-245 (gaps)
54
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1ylda_ (A:)
2a: SCOP_d1yldb1 (B:1-56)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Trypsin(ogen)
(500)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(36)
1a
d1ylda_
A:
Class
:
Small proteins
(3458)
Fold
:
BPTI-like
(161)
Superfamily
:
BPTI-like
(161)
Family
:
Small Kunitz-type inhibitors & BPTI-like toxins
(128)
Protein domain
:
Pancreatic trypsin inhibitor, BPTI
(85)
Cow (Bos taurus) [TaxId: 9913]
(85)
2a
d1yldb1
B:1-56
[
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1yldB00 (B:1-56)
2a: CATH_1yldA01 (A:16-27,A:121-232)
2b: CATH_1yldA02 (A:28-120,A:233-245)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Factor Xa Inhibitor
(116)
Homologous Superfamily
:
Factor Xa Inhibitor
(116)
Norway rat (Rattus norvegicus)
(11)
1a
1yldB00
B:1-56
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Norway rat (Rattus norvegicus)
(18)
2a
1yldA01
A:16-27,A:121-232
2b
1yldA02
A:28-120,A:233-245
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Trypsin_1yldA01 (A:16-238)
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(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Rattus norvegicus (Rat)
(15)
1a
Trypsin-1yldA01
A:16-238
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