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1YK1
Asym. Unit
Info
Asym.Unit (143 KB)
Biol.Unit 1 (138 KB)
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(1)
Title
:
STRUCTURE OF NATRIURETIC PEPTIDE RECEPTOR-C COMPLEXED WITH BRAIN NATRIURETIC PEPTIDE
Authors
:
X. He, K. C. Garcia
Date
:
16 Jan 05 (Deposition) - 18 Apr 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,E
Biol. Unit 1: A,B,E (1x)
Keywords
:
Hormone-Receptor Complex, Natriuretic Peptide Receptor, Allosteric Activation, Hormone-Growth Factor Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. L. He, A. Dukkipati, K. C. Garcia
Structural Determinants Of Natriuretic Peptide Receptor Specificity And Degeneracy.
J. Mol. Biol. V. 361 698 2006
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:219 , ASN A:248 , GLU A:306 , HOH A:597
BINDING SITE FOR RESIDUE NAG A 511
2
AC2
SOFTWARE
ASN A:349
BINDING SITE FOR RESIDUE NAG A 512
3
AC3
SOFTWARE
SER B:19 , LEU B:21 , ASN B:248 , SER B:250 , SER B:251 , GLU B:306 , NAG B:437 , HOH B:640
BINDING SITE FOR RESIDUE NAG B 436
4
AC4
SOFTWARE
NAG B:436
BINDING SITE FOR RESIDUE NAG B 437
5
AC5
SOFTWARE
ASN B:349 , HOH B:557
BINDING SITE FOR RESIDUE NAG B 512
6
AC6
SOFTWARE
SER A:61 , PRO A:89 , VAL A:90 , CYS A:91
BINDING SITE FOR RESIDUE CL A 513
7
AC7
SOFTWARE
SER B:61 , PRO B:89 , VAL B:90 , CYS B:91
BINDING SITE FOR RESIDUE CL B 513
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: NATRIURETIC_PEPTIDE (E:7-23)
2: ANF_RECEPTORS (A:88-105,B:88-105)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NATRIURETIC_PEPTIDE
PS00263
Natriuretic peptides signature.
ANFB_HUMAN
112-128
1
E:7-23
2
ANF_RECEPTORS
PS00458
Natriuretic peptides receptors signature.
ANPRC_HUMAN
133-150
2
A:88-105
B:88-105
[
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Exons
(8, 14)
Info
All Exons
Exon 1.3a (A:2-212 (gaps) | B:2-212 (gaps))
Exon 1.5 (A:212-253 | B:212-253)
Exon 1.6 (A:253-308 | B:253-308)
Exon 1.7 (A:309-354 | B:309-354)
Exon 1.8 (A:354-385 | B:354-385)
Exon 1.9a (A:386-401 | B:386-401)
Exon 2.2b (E:6-25)
Exon 2.3b (E:25-26)
View:
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All Exon Boundaries
01: Boundary -/1.3a
02: Boundary 1.3a/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9a
07: Boundary 1.9a/1.10a
08: Boundary 2.1b/2.2b
09: Boundary 2.2b/2.3b
10: Boundary 2.3b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000265074
3a
ENSE00001917259
chr5:
32711540-32712651
1112
ANPRC_HUMAN
1-257
257
2
A:2-212 (gaps)
B:2-212 (gaps)
211
211
1.5
ENST00000265074
5
ENSE00000735248
chr5:
32724804-32724926
123
ANPRC_HUMAN
257-298
42
2
A:212-253
B:212-253
42
42
1.6
ENST00000265074
6
ENSE00000971354
chr5:
32738970-32739136
167
ANPRC_HUMAN
298-353
56
2
A:253-308
B:253-308
56
56
1.7
ENST00000265074
7
ENSE00002059415
chr5:
32774814-32774949
136
ANPRC_HUMAN
354-399
46
2
A:309-354
B:309-354
46
46
1.8
ENST00000265074
8
ENSE00001082097
chr5:
32780828-32780922
95
ANPRC_HUMAN
399-430
32
2
A:354-385
B:354-385
32
32
1.9a
ENST00000265074
9a
ENSE00002167695
chr5:
32782999-32783134
136
ANPRC_HUMAN
431-476
46
2
A:386-401
B:386-401
16
16
1.10a
ENST00000265074
10a
ENSE00001164694
chr5:
32784902-32784989
88
ANPRC_HUMAN
476-505
30
0
-
-
1.11d
ENST00000265074
11d
ENSE00001938989
chr5:
32786340-32787256
917
ANPRC_HUMAN
505-541
37
0
-
-
2.1b
ENST00000376468
1b
ENSE00001871416
chr1:
11918988-11918759
230
ANFB_HUMAN
1-44
44
0
-
-
2.2b
ENST00000376468
2b
ENSE00000818947
chr1:
11918526-11918271
256
ANFB_HUMAN
45-130
86
1
E:6-25
20
2.3b
ENST00000376468
3b
ENSE00001826581
chr1:
11917728-11917521
208
ANFB_HUMAN
130-134
5
1
E:25-26
2
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1yk1A02 (A:135-281,A:369-400)
1b: CATH_1yk1A01 (A:2-134,A:284-368)
1c: CATH_1yk1B01 (B:2-134,B:284-368)
1d: CATH_1yk1B02 (B:135-281,B:369-400)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2300, no name defined]
(308)
Human (Homo sapiens)
(5)
1a
1yk1A02
A:135-281,A:369-400
1b
1yk1A01
A:2-134,A:284-368
1c
1yk1B01
B:2-134,B:284-368
1d
1yk1B02
B:135-281,B:369-400
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_ANF_receptor_1yk1B01 (B:26-379)
1b: PFAM_ANF_receptor_1yk1B02 (B:26-379)
2a: PFAM_ANP_1yk1E01 (E:6-23)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Periplas_BP
(97)
Family
:
ANF_receptor
(21)
Homo sapiens (Human)
(7)
1a
ANF_receptor-1yk1B01
B:26-379
1b
ANF_receptor-1yk1B02
B:26-379
Clan
:
no clan defined [family: ANP]
(2)
Family
:
ANP
(2)
Homo sapiens (Human)
(1)
2a
ANP-1yk1E01
E:6-23
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Asymmetric Unit 1
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Asym.Unit (143 KB)
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