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1YJY
Biol. Unit 1
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Asym.Unit (71 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
K226M MUTANT OF SERINE HYDROXYMETHYLTRANSFERASE FROM B. STEAROTHERMOPHILUS, COMPLEX WITH SERINE
Authors
:
S. Bhavani, V. Trivedi, V. R. Jala, H. S. Subramanya, P. Kaul, K. Purnima V. Prakash, R. N. Appaji, H. S. Savithri
Date
:
16 Jan 05 (Deposition) - 31 May 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Shmt, Mutant, Catalysis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. Bhavani, V. Trivedi, V. R. Jala, H. S. Subramanya, P. Kaul, K. Purnima, V. Prakash, R. N. Appaji, H. S. Savithri
Role Of Lys-226 In The Catalytic Mechanism Of Bacillus Stearothermophilus Serine Hydroxymethyltransferase-Crystal Structure And Kinetic Studies
Biochemistry V. 44 6929 2005
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2a: SERINE (SERa)
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No.
Name
Count
Type
Full Name
1
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
2
SER
2
Mod. Amino Acid
SERINE
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Sites
(2, 2)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:51 , SER A:93 , GLY A:94 , ALA A:95 , HIS A:122 , SER A:172 , ASP A:197 , ALA A:199 , HIS A:200 , THR A:223 , HIS A:225 , MET A:226 , GLY A:256 , GLY A:257 , SER A:601 , HOH A:623 , HOH A:637 , HOH A:638
BINDING SITE FOR RESIDUE PLP A 501
2
AC2
SOFTWARE
SER A:31 , GLU A:53 , TYR A:61 , HIS A:122 , SER A:172 , HIS A:200 , MET A:226 , ARG A:357 , PLP A:501 , HOH A:623
BINDING SITE FOR RESIDUE SER A 601
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1yjya1 (A:1-405)
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Protein Domains
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(
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Serine hydroxymethyltransferase
(50)
Bacillus stearothermophilus [TaxId: 1422]
(39)
1a
d1yjya1
A:1-405
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1yjyA02 (A:33-283)
2a: CATH_1yjyA01 (A:1-32,A:284-405)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(3)
1a
1yjyA02
A:33-283
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(3)
2a
1yjyA01
A:1-32,A:284-405
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SHMT_1yjyA01 (A:4-380)
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Clan
:
PLP_aminotran
(240)
Family
:
SHMT
(45)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(38)
1a
SHMT-1yjyA01
A:4-380
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