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1YJE
Asym. Unit
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Asym.Unit (42 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RNGFI-B LIGAND-BINDING DOMAIN
Authors
:
R. Flaig, H. Greschik, C. Peluso-Iltis, D. Moras, Structural Proteomics In Europe (Spine)
Date
:
14 Jan 05 (Deposition) - 22 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ngfi-B, Nur77, Nuclear Receptor, Ligand-Binding Domain, Novel Coregulator Interface, Cell-Specific, Structural Proteomics In Europe, Spine, Structural Genomics, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
R. Flaig, H. Greschik, C. Peluso-Iltis, D. Moras
Structural Basis For The Cell-Specific Activities Of The Ngfi-B And The Nurr1 Ligand-Binding Domain.
J. Biol. Chem. V. 280 19250 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(4, 4)
Info
All Exons
Exon 1.4 (A:362-385)
Exon 1.5 (A:386-453)
Exon 1.6 (A:453-513)
Exon 1.7 (A:513-594 (gaps))
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1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000010171
1
ENSRNOE00000070711
chr7:
140012807-140012914
108
NR4A1_RAT
-
0
0
-
-
1.2
ENSRNOT00000010171
2
ENSRNOE00000070817
chr7:
140015853-140016727
875
NR4A1_RAT
1-291
291
0
-
-
1.3
ENSRNOT00000010171
3
ENSRNOE00000071068
chr7:
140017539-140017668
130
NR4A1_RAT
292-335
44
0
-
-
1.4
ENSRNOT00000010171
4
ENSRNOE00000071313
chr7:
140017970-140018121
152
NR4A1_RAT
335-385
51
1
A:362-385
24
1.5
ENSRNOT00000010171
5
ENSRNOE00000071534
chr7:
140018491-140018693
203
NR4A1_RAT
386-453
68
1
A:386-453
68
1.6
ENSRNOT00000010171
6
ENSRNOE00000071749
chr7:
140018783-140018961
179
NR4A1_RAT
453-513
61
1
A:453-513
61
1.7
ENSRNOT00000010171
7
ENSRNOE00000071997
chr7:
140019754-140020587
834
NR4A1_RAT
513-597
85
1
A:513-594 (gaps)
82
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SCOP Domains
(1, 1)
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1a: SCOP_d1yjea_ (A:)
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Class
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All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
1a
d1yjea_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1yjeA00 (A:362-594)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Norway rat (Rattus norvegicus)
(18)
1a
1yjeA00
A:362-594
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Hormone_recep_1yjeA01 (A:390-581)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Rattus norvegicus (Rat)
(22)
1a
Hormone_recep-1yjeA01
A:390-581
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Asymmetric Unit 1
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Asym.Unit (42 KB)
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