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1YGR
Asym. Unit
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Asym.Unit (201 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TANDEM PHOSPHATASE DOMAIN OF RPTP CD45
Authors
:
H. J. Nam, F. Poy, H. Saito, C. A. Frederick
Date
:
05 Jan 05 (Deposition) - 22 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein Tyrosine Phosphatase, Rptp, Cd45, Lca, Lymphocyte Activation, Cd3 Zeta, Itam, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Nam, F. Poy, H. Saito, C. A. Frederick
Structural Basis For The Function And Regulation Of The Receptor Protein Tyrosine Phosphatase Cd45.
J. Exp. Med. V. 201 441 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 28)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: O-PHOSPHOTYROSINE (PTRa)
2b: O-PHOSPHOTYROSINE (PTRb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
26
Mod. Amino Acid
SELENOMETHIONINE
2
PTR
2
Mod. Amino Acid
O-PHOSPHOTYROSINE
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035654 (G840R, chain A/B, )
2: VAR_PTPRC_HUMAN_CCDS1397_1_02 (G840R, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035654
G
863
R
PTPRC_HUMAN
Unclassified
---
A/B
G
840
R
2
CancerSNP
VAR_PTPRC_HUMAN_CCDS1397_1_02
*
G
863
R
PTPRC_HUMAN
Disease (Breast cancer)
---
A/B
G
840
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 10)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_PTP (A:628-887,B:628-887|A:919-1203,B:9...)
2: TYR_PHOSPHATASE_2 (A:807-878,B:807-878|A:1110-1194,B:...)
3: TYR_PHOSPHATASE_1 (A:826-836,B:826-836)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_PTP
PS50055
PTP type protein phosphatase family profile.
PTPRC_HUMAN
651-910
942-1226
4
A:628-887
B:628-887
A:919-1203
B:919-1203
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
PTPRC_HUMAN
830-901
1133-1217
4
A:807-878
B:807-878
A:1110-1194
B:1110-1194
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
PTPRC_HUMAN
849-859
2
A:826-836
B:826-836
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Exons
(1, 2)
Info
All Exons
Exon 1.4 (C:2001-2006 | D:2001-2006)
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All Exon Boundaries
1: Boundary 1.3c/1.4
2: Boundary 1.4/1.5a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000362089
1b
ENSE00001897306
chr1:
167487775-167487645
131
CD3Z_HUMAN
1-20
20
0
-
-
1.2a
ENST00000362089
2a
ENSE00001164461
chr1:
167410004-167409901
104
CD3Z_HUMAN
20-54
35
0
-
-
1.3c
ENST00000362089
3c
ENSE00000958523
chr1:
167408637-167408581
57
CD3Z_HUMAN
55-73
19
0
-
-
1.4
ENST00000362089
4
ENSE00000958524
chr1:
167407887-167407807
81
CD3Z_HUMAN
74-100
27
2
C:2001-2006
D:2001-2006
6
6
1.5a
ENST00000362089
5a
ENSE00001067430
chr1:
167404671-167404636
36
CD3Z_HUMAN
101-112
12
0
-
-
1.5d
ENST00000362089
5d
ENSE00000958526
chr1:
167403313-167403257
57
CD3Z_HUMAN
113-131
19
0
-
-
1.6
ENST00000362089
6
ENSE00000958527
chr1:
167402296-167402261
36
CD3Z_HUMAN
132-143
12
0
-
-
1.7d
ENST00000362089
7d
ENSE00001924110
chr1:
167400983-167399877
1107
CD3Z_HUMAN
144-164
21
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ygrB01 (B:600-893)
1b: CATH_1ygrA01 (A:599-893)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
1ygrB01
B:600-893
1b
1ygrA01
A:599-893
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Y_phosphatase_1ygrB01 (B:943-1202)
1b: PFAM_Y_phosphatase_1ygrB02 (B:943-1202)
1c: PFAM_Y_phosphatase_1ygrB03 (B:943-1202)
1d: PFAM_Y_phosphatase_1ygrB04 (B:943-1202)
2a: PFAM_ITAM_1ygrD01 (D:2001-2006)
2b: PFAM_ITAM_1ygrD02 (D:2001-2006)
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Clans
(
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(
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(
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Organisms
(
)
(
)
Clan
:
Phosphatase
(121)
Family
:
Y_phosphatase
(93)
Homo sapiens (Human)
(82)
1a
Y_phosphatase-1ygrB01
B:943-1202
1b
Y_phosphatase-1ygrB02
B:943-1202
1c
Y_phosphatase-1ygrB03
B:943-1202
1d
Y_phosphatase-1ygrB04
B:943-1202
Clan
:
no clan defined [family: ITAM]
(3)
Family
:
ITAM
(3)
Homo sapiens (Human)
(2)
2a
ITAM-1ygrD01
D:2001-2006
2b
ITAM-1ygrD02
D:2001-2006
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