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1YGP
Asym. Unit
Info
Asym.Unit (281 KB)
Biol.Unit 1 (274 KB)
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(1)
Title
:
PHOSPHORYLATED FORM OF YEAST GLYCOGEN PHOSPHORYLASE WITH PHOSPHATE BOUND IN THE ACTIVE SITE.
Authors
:
K. Lin, V. L. Rath, S. C. Dai, R. J. Fletterick, P. K. Hwang
Date
:
30 May 96 (Deposition) - 23 Dec 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Yeast, Phosphorylated Form, Glycosyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Lin, V. L. Rath, S. C. Dai, R. J. Fletterick, P. K. Hwang
A Protein Phosphorylation Switch At The Conserved Allosteri Site In Gp.
Science V. 273 1539 1996
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
2
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:10N , ARG A:309 , ARG A:310 , LYS A:313
BINDING SITE FOR RESIDUE PO4 A 859
2
AC2
SOFTWARE
GLY A:134 , GLY A:135 , LEU A:136 , ARG A:569 , PLP A:860
BINDING SITE FOR RESIDUE PO4 A 1900
3
AC3
SOFTWARE
THR B:10N , ARG B:309 , ARG B:310 , LYS B:313
BINDING SITE FOR RESIDUE PO4 B 859
4
AC4
SOFTWARE
GLY B:134 , GLY B:135 , LEU B:136 , ARG B:569 , LYS B:574 , PLP B:860
BINDING SITE FOR RESIDUE PO4 B 1900
5
AC5
SOFTWARE
GLY A:135 , TRP A:491 , ASN A:649 , VAL A:650 , SER A:677 , LYS A:680 , PO4 A:1900
BINDING SITE FOR RESIDUE PLP A 860
6
AC6
SOFTWARE
LEU B:90 , GLY B:135 , TRP B:491 , ASN B:649 , VAL B:650 , SER B:677 , LYS B:680 , PO4 B:1900
BINDING SITE FOR RESIDUE PLP B 860
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PHOSPHORYLASE (A:672-684,B:672-684)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHOSPHORYLASE
PS00102
Phosphorylase pyridoxal-phosphate attachment site.
PHSG_YEAST
743-755
2
A:672-684
B:672-684
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:14N-831 (gaps) | B:14N-831 (gaps...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YPR160W
1
YPR160W.1
XVI:861302-864010
2709
PHSG_YEAST
1-902
902
2
A:14N-831 (gaps)
B:14N-831 (gaps)
887
887
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ygpa_ (A:)
1b: SCOP_d1ygpb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Superfamily
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Family
:
Oligosaccharide phosphorylase
(199)
Protein domain
:
Glycogen phosphorylase
(86)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d1ygpa_
A:
1b
d1ygpb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ygpA02 (A:486-812)
1b: CATH_1ygpB02 (B:486-812)
1c: CATH_1ygpA01 (A:10-485,A:813-818)
1d: CATH_1ygpB01 (B:4-485,B:813-818)
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Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glycogen Phosphorylase B;
(202)
Baker's yeast (Saccharomyces cerevisiae)
(2)
1a
1ygpA02
A:486-812
1b
1ygpB02
B:486-812
1c
1ygpA01
A:10-485,A:813-818
1d
1ygpB01
B:4-485,B:813-818
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Phosphorylase_1ygpB01 (B:113M-829)
1b: PFAM_Phosphorylase_1ygpB02 (B:113M-829)
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Clan
:
GT-B
(132)
Family
:
Phosphorylase
(83)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
1a
Phosphorylase-1ygpB01
B:113M-829
1b
Phosphorylase-1ygpB02
B:113M-829
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Asymmetric Unit 1
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Asym.Unit (281 KB)
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