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1YFC
Asym. Unit
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Asym.Unit (603 KB)
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Models
(20 )
Title
:
SOLUTION NMR STRUCTURE OF A YEAST ISO-1-FERROCYTOCHROME C
Authors
:
P. Baistrocchi, L. Banci, I. Bertini, P. Turano, K. L. Bren, H. B. Gray
Date
:
08 Aug 96 (Deposition) - 12 Mar 97 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Ferrocytochrome, Mitochondrion, Electron Transport, Respiratory Chain, Methylation
(Keyword Search:
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Reference
:
P. Baistrocchi, L. Banci, I. Bertini, P. Turano, K. L. Bren, H. B. Gray
Three-Dimensional Solution Structure Of Saccharomyces Cerevisiae Reduced Iso-1-Cytochrome C.
Biochemistry V. 35 13788 1996
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: HEME C (HECa)
2a: N-TRIMETHYLLYSINE (M3La)
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No.
Name
Count
Type
Full Name
1
HEC
1
Ligand/Ion
HEME C
2
M3L
1
Mod. Amino Acid
N-TRIMETHYLLYSINE
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:13 , CYS A:14 , GLN A:16 , CYS A:17 , HIS A:18 , VAL A:28 , PRO A:30 , LEU A:32 , TYR A:48 , THR A:49 , ASN A:52 , MET A:64 , TYR A:67 , LEU A:68 , LYS A:79 , MET A:80 , ALA A:81 , PHE A:82
BINDING SITE FOR RESIDUE HEC A 104
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: CYTC (A:1-101)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CYC1_YEAST
7-108
1
A:1-101
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Exons
(1, 1)
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All Exons
Exon 1.1 (A:-5-103)
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1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YJR048W
1
YJR048W.1
X:526327-526656
330
CYC1_YEAST
1-109
109
1
A:-5-103
108
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SCOP Domains
(1, 1)
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1a: SCOP_d1yfca_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Mitochondrial cytochrome c
(81)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(49)
1a
d1yfca_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1yfcA00 (A:-5-103)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Baker's yeast (Saccharomyces cerevisiae)
(49)
1a
1yfcA00
A:-5-103
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Cytochrom_C_1yfcA01 (A:3-101)
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Clan
:
Cytochrome-c
(108)
Family
:
Cytochrom_C
(54)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(18)
1a
Cytochrom_C-1yfcA01
A:3-101
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