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1YF1
Asym. Unit
Info
Asym.Unit (286 KB)
Biol.Unit 1 (279 KB)
Biol.Unit 2 (142 KB)
Biol.Unit 3 (280 KB)
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(1)
Title
:
STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE LINK BETWEEN ENZYMATIC ACTIVITY AND OLIGOMERIZATION IN AHPC, A BACTERIAL PEROXIREDOXIN.
Authors
:
D. Parsonage, D. S. Youngblood, G. N. Sarma, Z. A. Wood, P. A. Karplus, L.
Date
:
29 Dec 04 (Deposition) - 16 Aug 05 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (2x)
Biol. Unit 2: F,G,H,I,J (1x)
Biol. Unit 3: F,G,H,I,J (2x)
Keywords
:
Peroxiredoxin, Ahpc, Alkyl Hydroperoxide Reductase Subunit C, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Parsonage, D. S. Youngblood, G. N. Sarma, Z. A. Wood, P. A. Karplus, L. B. Poole
Analysis Of The Link Between Enzymatic Activity And Oligomeric State In Ahpc, A Bacterial Peroxiredoxin.
Biochemistry V. 44 10583 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SODIUM ION (NAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NA
1
Ligand/Ion
SODIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:72 , HOH A:1076 , HOH A:1218
BINDING SITE FOR RESIDUE NA A 6001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 10)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:1-156,B:1-156,C:1-156,D:1-156,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
AHPC_SALTY
2-157
10
A:1-156
B:1-156
C:1-156
D:1-156
E:1-156
F:1-156
G:1-156
H:1-156
I:1-156
J:1-156
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1yf1a1 (A:1-166)
1b: SCOP_d1yf1b_ (B:)
1c: SCOP_d1yf1c_ (C:)
1d: SCOP_d1yf1d_ (D:)
1e: SCOP_d1yf1e_ (E:)
1f: SCOP_d1yf1f_ (F:)
1g: SCOP_d1yf1g_ (G:)
1h: SCOP_d1yf1h_ (H:)
1i: SCOP_d1yf1i_ (I:)
1j: SCOP_d1yf1j_ (J:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Alkyl hydroperoxide reductase AhpC
(9)
Salmonella typhimurium [TaxId: 90371]
(5)
1a
d1yf1a1
A:1-166
1b
d1yf1b_
B:
1c
d1yf1c_
C:
1d
d1yf1d_
D:
1e
d1yf1e_
E:
1f
d1yf1f_
F:
1g
d1yf1g_
G:
1h
d1yf1h_
H:
1i
d1yf1i_
I:
1j
d1yf1j_
J:
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1yf1C00 (C:1-163)
1b: CATH_1yf1H00 (H:1-163)
1c: CATH_1yf1B00 (B:1-165)
1d: CATH_1yf1E00 (E:1-165)
1e: CATH_1yf1G00 (G:1-165)
1f: CATH_1yf1J00 (J:1-165)
1g: CATH_1yf1A00 (A:1-166)
1h: CATH_1yf1D00 (D:1-166)
1i: CATH_1yf1F00 (F:1-166)
1j: CATH_1yf1I00 (I:1-166)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Salmonella typhimurium. Organism_taxid: 602.
(6)
1a
1yf1C00
C:1-163
1b
1yf1H00
H:1-163
1c
1yf1B00
B:1-165
1d
1yf1E00
E:1-165
1e
1yf1G00
G:1-165
1f
1yf1J00
J:1-165
1g
1yf1A00
A:1-166
1h
1yf1D00
D:1-166
1i
1yf1F00
F:1-166
1j
1yf1I00
I:1-166
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Pfam Domains
(2, 20)
Info
all PFAM domains
1a: PFAM_AhpC_TSA_1yf1J01 (J:3-133)
1b: PFAM_AhpC_TSA_1yf1J02 (J:3-133)
1c: PFAM_AhpC_TSA_1yf1J03 (J:3-133)
1d: PFAM_AhpC_TSA_1yf1J04 (J:3-133)
1e: PFAM_AhpC_TSA_1yf1J05 (J:3-133)
1f: PFAM_AhpC_TSA_1yf1J06 (J:3-133)
1g: PFAM_AhpC_TSA_1yf1J07 (J:3-133)
1h: PFAM_AhpC_TSA_1yf1J08 (J:3-133)
1i: PFAM_AhpC_TSA_1yf1J09 (J:3-133)
1j: PFAM_AhpC_TSA_1yf1J10 (J:3-133)
2a: PFAM_1_cysPrx_C_1yf1J11 (J:153-165)
2b: PFAM_1_cysPrx_C_1yf1J12 (J:153-165)
2c: PFAM_1_cysPrx_C_1yf1J13 (J:153-165)
2d: PFAM_1_cysPrx_C_1yf1J14 (J:153-165)
2e: PFAM_1_cysPrx_C_1yf1J15 (J:153-165)
2f: PFAM_1_cysPrx_C_1yf1J16 (J:153-165)
2g: PFAM_1_cysPrx_C_1yf1J17 (J:153-165)
2h: PFAM_1_cysPrx_C_1yf1J18 (J:153-165)
2i: PFAM_1_cysPrx_C_1yf1J19 (J:153-165)
2j: PFAM_1_cysPrx_C_1yf1J20 (J:153-165)
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Clans
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Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
AhpC-TSA
(28)
Salmonella typhimurium
(5)
1a
AhpC-TSA-1yf1J01
J:3-133
1b
AhpC-TSA-1yf1J02
J:3-133
1c
AhpC-TSA-1yf1J03
J:3-133
1d
AhpC-TSA-1yf1J04
J:3-133
1e
AhpC-TSA-1yf1J05
J:3-133
1f
AhpC-TSA-1yf1J06
J:3-133
1g
AhpC-TSA-1yf1J07
J:3-133
1h
AhpC-TSA-1yf1J08
J:3-133
1i
AhpC-TSA-1yf1J09
J:3-133
1j
AhpC-TSA-1yf1J10
J:3-133
Clan
:
no clan defined [family: 1-cysPrx_C]
(19)
Family
:
1-cysPrx_C
(19)
Salmonella typhimurium
(5)
2a
1-cysPrx_C-1yf1J11
J:153-165
2b
1-cysPrx_C-1yf1J12
J:153-165
2c
1-cysPrx_C-1yf1J13
J:153-165
2d
1-cysPrx_C-1yf1J14
J:153-165
2e
1-cysPrx_C-1yf1J15
J:153-165
2f
1-cysPrx_C-1yf1J16
J:153-165
2g
1-cysPrx_C-1yf1J17
J:153-165
2h
1-cysPrx_C-1yf1J18
J:153-165
2i
1-cysPrx_C-1yf1J19
J:153-165
2j
1-cysPrx_C-1yf1J20
J:153-165
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