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1YE9
Asym. Unit
Info
Asym.Unit (642 KB)
Biol.Unit 1 (320 KB)
Biol.Unit 2 (319 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROTEOLYTICALLY TRUNCATED CATALASE HPII FROM E. COLI
Authors
:
P. C. Loewen, P. Chelikani, X. Carpena, I. Fita, R. Perez-Luque, L. J. Donald, J. Switala, H. W. Duckworth
Date
:
28 Dec 04 (Deposition) - 26 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: I,J,K,L,M,N,O,P (1x)
Keywords
:
Catalase Hpii, Proteolytic Truncation, Beta Barrel Core, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Chelikani, X. Carpena, R. Perez-Luque, L. J. Donald, H. W. Duckworth, J. Switala, I. Fita, P. C. Loewen
Characterization Of A Large Subunit Catalase Truncated By Proteolytic Cleavage(, )
Biochemistry V. 44 5597 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDa)
1b: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDb)
1c: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDc)
1d: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDd)
1e: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDe)
1f: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDf)
1g: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDg)
1h: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HDD
8
Ligand/Ion
CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:125 , VAL A:127 , HIS A:128 , ARG A:165 , GLY A:184 , VAL A:199 , GLY A:200 , ASN A:201 , PHE A:206 , PHE A:214 , ILE A:274 , HOH A:303 , PHE D:117 , HOH E:137 , PHE E:391 , LEU E:407 , ARG E:411 , SER E:414 , TYR E:415 , GLN E:419
BINDING SITE FOR RESIDUE HDD E 760
2
AC2
SOFTWARE
ARG B:125 , ILE B:126 , VAL B:127 , HIS B:128 , ARG B:165 , GLY B:184 , VAL B:199 , GLY B:200 , ASN B:201 , PHE B:206 , PHE B:214 , ILE B:274 , PHE F:391 , LEU F:407 , ARG F:411 , SER F:414 , TYR F:415 , THR F:418 , GLN F:419 , ARG F:422
BINDING SITE FOR RESIDUE HDD F 760
3
AC3
SOFTWARE
PHE B:117 , ARG C:125 , ILE C:126 , VAL C:127 , HIS C:128 , ARG C:165 , GLY C:184 , VAL C:199 , GLY C:200 , ASN C:201 , PHE C:206 , PHE C:214 , ILE C:274 , HIS C:275 , PHE G:391 , LEU G:407 , ARG G:411 , SER G:414 , TYR G:415 , THR G:418 , GLN G:419
BINDING SITE FOR RESIDUE HDD G 760
4
AC4
SOFTWARE
ARG D:125 , ILE D:126 , VAL D:127 , HIS D:128 , ARG D:165 , GLY D:184 , VAL D:199 , GLY D:200 , ASN D:201 , PHE D:206 , PHE D:214 , PHE H:391 , LEU H:407 , ARG H:411 , SER H:414 , TYR H:415 , THR H:418 , GLN H:419 , ARG H:422
BINDING SITE FOR RESIDUE HDD H 760
5
AC5
SOFTWARE
ARG I:125 , ILE I:126 , VAL I:127 , HIS I:128 , ARG I:165 , GLY I:184 , VAL I:199 , GLY I:200 , ASN I:201 , PHE I:214 , HIS I:275 , PHE M:391 , LEU M:407 , ARG M:411 , SER M:414 , TYR M:415 , THR M:418 , GLN M:419
BINDING SITE FOR RESIDUE HDD M 760
6
AC6
SOFTWARE
ARG J:125 , VAL J:127 , HIS J:128 , ARG J:165 , GLY J:184 , VAL J:199 , GLY J:200 , ASN J:201 , PHE J:206 , PHE J:214 , ILE J:274 , PHE K:117 , PHE N:391 , LEU N:407 , ARG N:411 , SER N:414 , TYR N:415 , GLN N:419
BINDING SITE FOR RESIDUE HDD N 760
7
AC7
SOFTWARE
ARG K:125 , VAL K:127 , HIS K:128 , ARG K:165 , GLY K:184 , VAL K:199 , GLY K:200 , ASN K:201 , PHE K:206 , PHE K:214 , HIS K:275 , PHE O:391 , LEU O:407 , ARG O:411 , SER O:414 , TYR O:415 , THR O:418 , GLN O:419 , ARG O:422 , HOH O:761
BINDING SITE FOR RESIDUE HDD O 760
8
AC8
SOFTWARE
ARG L:125 , ILE L:126 , VAL L:127 , HIS L:128 , ARG L:165 , GLY L:184 , ALA L:186 , VAL L:199 , GLY L:200 , ASN L:201 , PHE L:206 , PHE L:214 , ILE L:274 , PHE P:391 , ARG P:411 , SER P:414 , TYR P:415 , THR P:418 , GLN P:419 , ARG P:422
BINDING SITE FOR RESIDUE HDD P 760
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 24)
Info
All PROSITE Patterns/Profiles
1: CATALASE_3 (A:77-297,B:77-297,C:77-297,D:77-29...)
2: CATALASE_2 (A:117-133,B:117-133,C:117-133,D:11...)
3: CATALASE_1 (E:411-419,F:411-419,G:411-419,H:41...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CATALASE_3
PS51402
catalase family profile.
CATE_ECOLI
77-568
8
A:77-297
B:77-297
C:77-297
D:77-297
I:77-297
J:77-297
K:77-297
L:77-297
2
CATALASE_2
PS00438
Catalase proximal active site signature.
CATE_ECOLI
117-133
8
A:117-133
B:117-133
C:117-133
D:117-133
I:117-133
J:117-133
K:117-133
L:117-133
3
CATALASE_1
PS00437
Catalase proximal heme-ligand signature.
CATE_ECOLI
411-419
8
E:411-419
F:411-419
G:411-419
H:411-419
M:411-419
N:411-419
O:411-419
P:411-419
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Exons
(0, 0)
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Pfam Domains
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Show PDB file:
Asym.Unit (642 KB)
Header - Asym.Unit
Biol.Unit 1 (320 KB)
Header - Biol.Unit 1
Biol.Unit 2 (319 KB)
Header - Biol.Unit 2
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