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1YE4
Asym. Unit
Info
Asym.Unit (227 KB)
Biol.Unit 1 (112 KB)
Biol.Unit 2 (114 KB)
Biol.Unit 3 (221 KB)
Biol.Unit 4 (221 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE LYS-274 TO ARG MUTANT OF CANDIDA TENUIS XYLOSE REDUCTASE (AKR2B5) BOUND TO NAD+
Authors
:
S. Leitgeb, B. Petschacher, D. K. Wilson, B. Nidetzky
Date
:
28 Dec 04 (Deposition) - 01 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Beta-Alpha-Barrel Akr Aldo-Keto Reductase Coenzyme Specificity Nad, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Leitgeb, B. Petschacher, D. K. Wilson, B. Nidetzky
Fine Tuning Of Coenzyme Specificity In Family 2 Aldo-Keto Reductases Revealed By Crystal Structures Of The Lys-274-->Arg Mutant Of Candida Tenuis Xylose Reductase (Akr2B5) Bound To Nad(+) And Nadp(+).
Febs Lett. V. 579 763 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:25 , LEU B:26 , ALA B:27 , GLN B:34 , ARG B:274
BINDING SITE FOR RESIDUE SO4 B 901
02
AC2
SOFTWARE
ARG D:232
BINDING SITE FOR RESIDUE SO4 D 902
03
AC3
SOFTWARE
HIS C:14 , LEU C:15 , HOH C:1011
BINDING SITE FOR RESIDUE SO4 C 903
04
AC4
SOFTWARE
HIS A:14 , LEU A:15 , HOH A:921
BINDING SITE FOR RESIDUE SO4 A 904
05
AC5
SOFTWARE
HIS B:14 , LEU B:15 , HOH B:942
BINDING SITE FOR RESIDUE SO4 B 905
06
AC6
SOFTWARE
LYS D:25 , LEU D:26 , ALA D:27 , THR D:30 , GLN D:34 , ARG D:274 , HOH D:969
BINDING SITE FOR RESIDUE SO4 D 906
07
AC7
SOFTWARE
GLY A:22 , CYS A:23 , TRP A:24 , ASP A:47 , TYR A:52 , LYS A:81 , HIS A:114 , SER A:169 , ASN A:170 , GLN A:191 , TYR A:217 , SER A:218 , SER A:219 , PHE A:220 , GLN A:223 , SER A:224 , GLU A:227 , ALA A:257 , ILE A:272 , PRO A:273 , ARG A:274 , ASN A:276 , ARG A:280 , ASN A:284 , HOH A:910
BINDING SITE FOR RESIDUE NAD A 800
08
AC8
SOFTWARE
GLY B:22 , CYS B:23 , TRP B:24 , ASP B:47 , TYR B:52 , LYS B:81 , HIS B:114 , SER B:169 , ASN B:170 , GLN B:191 , TYR B:217 , SER B:218 , SER B:219 , PHE B:220 , GLN B:223 , SER B:224 , GLU B:227 , ASN B:229 , PHE B:240 , ALA B:257 , ILE B:272 , PRO B:273 , ARG B:274 , ASN B:276 , ARG B:280 , ASN B:284 , ASN B:310 , HOH B:907 , HOH B:922 , HOH B:924 , HOH B:946 , HOH B:952
BINDING SITE FOR RESIDUE NAD B 801
09
AC9
SOFTWARE
GLY C:22 , CYS C:23 , TRP C:24 , ASP C:47 , TYR C:52 , LYS C:81 , HIS C:114 , SER C:169 , ASN C:170 , GLN C:191 , TYR C:217 , SER C:218 , SER C:219 , PHE C:220 , GLN C:223 , SER C:224 , GLU C:227 , PHE C:240 , ALA C:257 , ILE C:272 , PRO C:273 , ARG C:274 , ASN C:276 , ARG C:280 , ASN C:284 , ASN C:310 , HOH C:918
BINDING SITE FOR RESIDUE NAD C 802
10
BC1
SOFTWARE
GLY D:22 , CYS D:23 , TRP D:24 , ASP D:47 , TYR D:52 , LYS D:81 , HIS D:114 , SER D:169 , ASN D:170 , GLN D:191 , TYR D:217 , SER D:218 , SER D:219 , PHE D:220 , GLN D:223 , SER D:224 , GLU D:227 , ASN D:229 , PHE D:240 , ILE D:272 , PRO D:273 , ARG D:274 , ASN D:276 , ARG D:280 , GLN D:283 , ASN D:284 , ASN D:310 , HOH D:912 , HOH D:934 , HOH D:1020 , HOH D:1024
BINDING SITE FOR RESIDUE NAD D 803
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (A:42-59,B:42-59,C:42-59,D:42-59)
2: ALDOKETO_REDUCTASE_2 (A:154-171,B:154-171,C:154-171,D:15...)
3: ALDOKETO_REDUCTASE_3 (A:272-287,B:272-287,C:272-287,D:27...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
XYL1_CANTE
42-59
4
A:42-59
B:42-59
C:42-59
D:42-59
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
XYL1_CANTE
154-171
4
A:154-171
B:154-171
C:154-171
D:154-171
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
XYL1_CANTE
272-287
4
A:272-287
B:272-287
C:272-287
D:272-287
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ye4a_ (A:)
1b: SCOP_d1ye4b_ (B:)
1c: SCOP_d1ye4c_ (C:)
1d: SCOP_d1ye4d_ (D:)
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Protein Domains
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
Xylose reductase
(8)
Fungus (Candida tenuis) [TaxId: 45596]
(8)
1a
d1ye4a_
A:
1b
d1ye4b_
B:
1c
d1ye4c_
C:
1d
d1ye4d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ye4A00 (A:4-322)
1b: CATH_1ye4B00 (B:4-322)
1c: CATH_1ye4C00 (C:4-322)
1d: CATH_1ye4D00 (D:4-322)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Candida tenuis. Organism_taxid: 45596.
(7)
1a
1ye4A00
A:4-322
1b
1ye4B00
B:4-322
1c
1ye4C00
C:4-322
1d
1ye4D00
D:4-322
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aldo_ket_red_1ye4D01 (D:18-305)
1b: PFAM_Aldo_ket_red_1ye4D02 (D:18-305)
1c: PFAM_Aldo_ket_red_1ye4D03 (D:18-305)
1d: PFAM_Aldo_ket_red_1ye4D04 (D:18-305)
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Clan
:
no clan defined [family: Aldo_ket_red]
(94)
Family
:
Aldo_ket_red
(94)
Candida tenuis (Yeast)
(6)
1a
Aldo_ket_red-1ye4D01
D:18-305
1b
Aldo_ket_red-1ye4D02
D:18-305
1c
Aldo_ket_red-1ye4D03
D:18-305
1d
Aldo_ket_red-1ye4D04
D:18-305
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Asym.Unit (227 KB)
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