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Getting 'Exon' information from database.
1YDE
Asym. Unit
Info
Asym.Unit (598 KB)
Biol.Unit 1 (155 KB)
Biol.Unit 2 (156 KB)
Biol.Unit 3 (154 KB)
Biol.Unit 4 (147 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RETINAL SHORT-CHAIN DEHYDROGENASE/REDUCTASE 3
Authors
:
P. Lukacik, G. Bunkozci, K. Kavanagh, M. Sundstrom, C. Arrowsmith, A. E F. Von Delft, U. Oppermann, Structural Genomics Consortium (Sgc
Date
:
23 Dec 04 (Deposition) - 18 Jan 05 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Oxidoreductase, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Lukacik, B. Keller, G. Bunkoczi, K. L. Kavanagh, K. Kavanagh, W. H. Lee, W. Hwa Lee, J. Adamski, U. Oppermann
Structural And Biochemical Characterization Of Human Orphan Dhrs10 Reveals A Novel Cytosolic Enzyme With Steroid Dehydrogenase Activity.
Biochem. J. V. 402 419 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 32)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_052307 (N31D, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
2: VAR_052308 (R130W, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052307
N
31
D
DHB14_HUMAN
Polymorphism
8110220
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
N
31
D
2
UniProt
VAR_052308
R
130
W
DHB14_HUMAN
Polymorphism
35299026
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
R
130
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:141-169,B:141-169,C:141-169,D:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DHB14_HUMAN
141-169
16
A:141-169
B:141-169
C:141-169
D:141-169
E:141-169
F:141-169
G:141-169
H:141-169
I:141-169
J:141-169
K:141-169
L:141-169
M:141-169
N:141-169
O:141-169
P:141-169
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Exons
(9, 144)
Info
All Exons
Exon 1.1 (A:4-30 | B:3-30 | C:4-30 | D:4-30 ...)
Exon 1.2 (A:30-43 | B:30-43 | C:30-43 | D:30...)
Exon 1.3 (A:43-70 | B:43-70 | C:43-70 | D:43...)
Exon 1.4 (A:71-93 | B:71-93 | C:71-93 | D:71...)
Exon 1.5 (A:93-123 | B:93-123 | C:93-123 | D...)
Exon 1.6 (A:124-158 | B:124-158 | C:124-158 ...)
Exon 1.7 (A:159-181 | B:159-181 | C:159-181 ...)
Exon 1.8 (A:181-213 | B:181-213 (gaps) | C:1...)
Exon 1.9 (A:214-253 | B:214-257 | C:214-253 ...)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000263278
1
ENSE00001235120
chr19:
49339934-49339581
354
DHB14_HUMAN
1-30
30
16
A:4-30
B:3-30
C:4-30
D:4-30
E:4-30
F:4-30
G:6-30
H:5-30
I:7-30
J:4-30
K:4-30
L:4-30
M:10-30
N:10-30
O:7-30
P:6-30
27
28
27
27
27
27
25
26
24
27
27
27
21
21
24
25
1.2
ENST00000263278
2
ENSE00000718274
chr19:
49339100-49339062
39
DHB14_HUMAN
30-43
14
16
A:30-43
B:30-43
C:30-43
D:30-43
E:30-43
F:30-43
G:30-43
H:30-43
I:30-43
J:30-43
K:30-43
L:30-43
M:30-43
N:30-43
O:30-43
P:30-43
14
14
14
14
14
14
14
14
14
14
14
14
14
14
14
14
1.3
ENST00000263278
3
ENSE00000718268
chr19:
49337615-49337533
83
DHB14_HUMAN
43-70
28
16
A:43-70
B:43-70
C:43-70
D:43-70
E:43-70
F:43-70
G:43-70
H:43-70
I:43-70
J:43-70
K:43-70
L:43-70
M:43-70
N:43-70
O:43-70
P:43-70
28
28
28
28
28
28
28
28
28
28
28
28
28
28
28
28
1.4
ENST00000263278
4
ENSE00000718264
chr19:
49335989-49335923
67
DHB14_HUMAN
71-93
23
16
A:71-93
B:71-93
C:71-93
D:71-93
E:71-93
F:71-93
G:71-93
H:71-93
I:71-93
J:71-93
K:71-93
L:71-93
M:71-93
N:71-93
O:71-93
P:71-93
23
23
23
23
23
23
23
23
23
23
23
23
23
23
23
23
1.5
ENST00000263278
5
ENSE00000554872
chr19:
49335016-49334925
92
DHB14_HUMAN
93-123
31
16
A:93-123
B:93-123
C:93-123
D:93-123
E:93-123
F:93-123
G:93-123
H:93-123
I:93-123
J:93-123
K:93-123
L:93-123
M:93-123
N:93-123
O:93-123
P:93-123
31
31
31
31
31
31
31
31
31
31
31
31
31
31
31
31
1.6
ENST00000263278
6
ENSE00000718253
chr19:
49318398-49318294
105
DHB14_HUMAN
124-158
35
16
A:124-158
B:124-158
C:124-158
D:124-158
E:124-158
F:124-158
G:124-158
H:124-158
I:124-158
J:124-158
K:124-158
L:124-158
M:124-158
N:124-158
O:124-158
P:124-158
35
35
35
35
35
35
35
35
35
35
35
35
35
35
35
35
1.7
ENST00000263278
7
ENSE00000718247
chr19:
49316987-49316920
68
DHB14_HUMAN
159-181
23
16
A:159-181
B:159-181
C:159-181
D:159-181
E:159-181
F:159-181
G:159-181
H:159-181
I:159-181
J:159-181
K:159-181
L:159-181
M:159-181
N:159-181
O:159-181
P:159-181
23
23
23
23
23
23
23
23
23
23
23
23
23
23
23
23
1.8
ENST00000263278
8
ENSE00000718241
chr19:
49316809-49316713
97
DHB14_HUMAN
181-213
33
16
A:181-213
B:181-213 (gaps)
C:181-213
D:181-213
E:181-213
F:181-213
G:181-213
H:181-213
I:181-213
J:181-213
K:181-213
L:181-213
M:181-213
N:181-213 (gaps)
O:181-213
P:181-213
33
33
33
33
33
33
33
33
33
33
33
33
33
33
33
33
1.9
ENST00000263278
9
ENSE00001235115
chr19:
49316605-49316279
327
DHB14_HUMAN
214-270
57
16
A:214-253
B:214-257
C:214-253
D:214-258
E:214-253
F:214-259
G:214-252
H:214-258
I:214-253
J:214-258
K:214-253
L:214-258
M:214-253
N:214-257
O:214-253
P:214-259
40
44
40
45
40
46
39
45
40
45
40
45
40
44
40
46
[
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SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1ydeb_ (B:)
1b: SCOP_d1ydec_ (C:)
1c: SCOP_d1yded_ (D:)
1d: SCOP_d1ydee_ (E:)
1e: SCOP_d1ydef_ (F:)
1f: SCOP_d1ydeg_ (G:)
1g: SCOP_d1ydeh_ (H:)
1h: SCOP_d1ydei_ (I:)
1i: SCOP_d1ydej_ (J:)
1j: SCOP_d1ydek_ (K:)
1k: SCOP_d1ydel_ (L:)
1l: SCOP_d1ydem_ (M:)
1m: SCOP_d1yden_ (N:)
1n: SCOP_d1ydeo_ (O:)
1o: SCOP_d1ydep_ (P:)
2a: SCOP_d1ydea1 (A:4-253)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d1ydeb_
B:
1b
d1ydec_
C:
1c
d1yded_
D:
1d
d1ydee_
E:
1e
d1ydef_
F:
1f
d1ydeg_
G:
1g
d1ydeh_
H:
1h
d1ydei_
I:
1i
d1ydej_
J:
1j
d1ydek_
K:
1k
d1ydel_
L:
1l
d1ydem_
M:
1m
d1yden_
N:
1n
d1ydeo_
O:
1o
d1ydep_
P:
Protein domain
:
Retinal dehydrogenase/reductase 3
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1ydea1
A:4-253
[
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1ydeN00 (N:10-257)
1b: CATH_1ydeM00 (M:10-253)
1c: CATH_1ydeB00 (B:3-257)
1d: CATH_1ydeG00 (G:6-252)
1e: CATH_1ydeI00 (I:7-253)
1f: CATH_1ydeO00 (O:7-253)
1g: CATH_1ydeA00 (A:4-253)
1h: CATH_1ydeC00 (C:4-253)
1i: CATH_1ydeE00 (E:4-253)
1j: CATH_1ydeK00 (K:4-253)
1k: CATH_1ydeH00 (H:5-258)
1l: CATH_1ydeP00 (P:6-259)
1m: CATH_1ydeD00 (D:4-258)
1n: CATH_1ydeJ00 (J:4-258)
1o: CATH_1ydeL00 (L:4-258)
1p: CATH_1ydeF00 (F:4-259)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1ydeN00
N:10-257
1b
1ydeM00
M:10-253
1c
1ydeB00
B:3-257
1d
1ydeG00
G:6-252
1e
1ydeI00
I:7-253
1f
1ydeO00
O:7-253
1g
1ydeA00
A:4-253
1h
1ydeC00
C:4-253
1i
1ydeE00
E:4-253
1j
1ydeK00
K:4-253
1k
1ydeH00
H:5-258
1l
1ydeP00
P:6-259
1m
1ydeD00
D:4-258
1n
1ydeJ00
J:4-258
1o
1ydeL00
L:4-258
1p
1ydeF00
F:4-259
[
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_adh_short_1ydeP01 (P:10-172)
1b: PFAM_adh_short_1ydeP02 (P:10-172)
1c: PFAM_adh_short_1ydeP03 (P:10-172)
1d: PFAM_adh_short_1ydeP04 (P:10-172)
1e: PFAM_adh_short_1ydeP05 (P:10-172)
1f: PFAM_adh_short_1ydeP06 (P:10-172)
1g: PFAM_adh_short_1ydeP07 (P:10-172)
1h: PFAM_adh_short_1ydeP08 (P:10-172)
1i: PFAM_adh_short_1ydeP09 (P:10-172)
1j: PFAM_adh_short_1ydeP10 (P:10-172)
1k: PFAM_adh_short_1ydeP11 (P:10-172)
1l: PFAM_adh_short_1ydeP12 (P:10-172)
1m: PFAM_adh_short_1ydeP13 (P:10-172)
1n: PFAM_adh_short_1ydeP14 (P:10-172)
1o: PFAM_adh_short_1ydeP15 (P:10-172)
1p: PFAM_adh_short_1ydeP16 (P:10-172)
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(
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Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Homo sapiens (Human)
(21)
1a
adh_short-1ydeP01
P:10-172
1b
adh_short-1ydeP02
P:10-172
1c
adh_short-1ydeP03
P:10-172
1d
adh_short-1ydeP04
P:10-172
1e
adh_short-1ydeP05
P:10-172
1f
adh_short-1ydeP06
P:10-172
1g
adh_short-1ydeP07
P:10-172
1h
adh_short-1ydeP08
P:10-172
1i
adh_short-1ydeP09
P:10-172
1j
adh_short-1ydeP10
P:10-172
1k
adh_short-1ydeP11
P:10-172
1l
adh_short-1ydeP12
P:10-172
1m
adh_short-1ydeP13
P:10-172
1n
adh_short-1ydeP14
P:10-172
1o
adh_short-1ydeP15
P:10-172
1p
adh_short-1ydeP16
P:10-172
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Asym.Unit (598 KB)
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