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1YCR
Asym. Unit
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Asym.Unit (21 KB)
Biol.Unit 1 (18 KB)
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(1)
Title
:
MDM2 BOUND TO THE TRANSACTIVATION DOMAIN OF P53
Authors
:
P. H. Kussie, N. P. Pavletich
Date
:
30 Sep 96 (Deposition) - 19 Nov 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Anti-Oncogene, Dna-Binding, Transcription Regulation, Nuclear Protein, Complex (Oncogene Protein/Peptide), Phosphorylation, Activator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. H. Kussie, S. Gorina, V. Marechal, B. Elenbaas, J. Moreau, A. J. Levine, N. P. Pavletich
Structure Of The Mdm2 Oncoprotein Bound To The P53 Tumor Suppressor Transactivation Domain.
Science V. 274 948 1996
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_044551 (E17D, chain B, )
2: VAR_044552 (K24N, chain B, )
3: VAR_044553 (E28A, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_044551
E
17
D
P53_HUMAN
Unclassified
---
B
E
17
D
2
UniProt
VAR_044552
K
24
N
P53_HUMAN
Unclassified
---
B
K
24
N
3
UniProt
VAR_044553
E
28
A
P53_HUMAN
Unclassified
---
B
E
28
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(2, 2)
Info
All Exons
Exon 1.3a (B:17-25)
Exon 1.3d (B:25-29)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.3a
2: Boundary 1.3a/1.3d
3: Boundary 1.3d/1.4b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000269305
1a
ENSE00001146308
chr17:
7590856-7590695
162
P53_HUMAN
-
0
0
-
-
1.3a
ENST00000269305
3a
ENSE00002194362
chr17:
7579940-7579839
102
P53_HUMAN
1-25
25
1
B:17-25
9
1.3d
ENST00000269305
3d
ENSE00001710434
chr17:
7579721-7579700
22
P53_HUMAN
25-32
8
1
B:25-29
5
1.4b
ENST00000269305
4b
ENSE00001718735
chr17:
7579590-7579312
279
P53_HUMAN
33-125
93
0
-
-
1.5d
ENST00000269305
5d
ENSE00001255919
chr17:
7578554-7578371
184
P53_HUMAN
126-187
62
0
-
-
1.6a
ENST00000269305
6a
ENSE00001255912
chr17:
7578289-7578177
113
P53_HUMAN
187-224
38
0
-
-
1.7b
ENST00000269305
7b
ENSE00001665758
chr17:
7577608-7577499
110
P53_HUMAN
225-261
37
0
-
-
1.8
ENST00000269305
8
ENSE00001789298
chr17:
7577155-7577019
137
P53_HUMAN
261-307
47
0
-
-
1.9
ENST00000269305
9
ENSE00002149110
chr17:
7576926-7576853
74
P53_HUMAN
307-331
25
0
-
-
1.11
ENST00000269305
11
ENSE00001728015
chr17:
7574033-7573927
107
P53_HUMAN
332-367
36
0
-
-
1.12d
ENST00000269305
12d
ENSE00001757276
chr17:
7573008-7571720
1289
P53_HUMAN
367-393
27
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ycra_ (A:)
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Protein Domains
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(
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Class
:
All alpha proteins
(14657)
Fold
:
SWIB/MDM2 domain
(62)
Superfamily
:
SWIB/MDM2 domain
(62)
Family
:
SWIB/MDM2 domain
(52)
Protein domain
:
MDM2
(48)
Human (Homo sapiens) [TaxId: 9606]
(39)
1a
d1ycra_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ycrA00 (A:25-109)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
MDM2
(34)
Homologous Superfamily
:
MDM2
(34)
Human (Homo sapiens)
(22)
1a
1ycrA00
A:25-109
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_P53_TAD_1ycrB01 (B:17-29)
2a: PFAM_SWIB_1ycrA01 (A:27-102)
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Clans
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Clan
:
no clan defined [family: P53_TAD]
(6)
Family
:
P53_TAD
(6)
Homo sapiens (Human)
(6)
1a
P53_TAD-1ycrB01
B:17-29
Clan
:
no clan defined [family: SWIB]
(22)
Family
:
SWIB
(22)
Homo sapiens (Human)
(15)
2a
SWIB-1ycrA01
A:27-102
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