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1YC0
Asym. Unit
Info
Asym.Unit (59 KB)
Biol.Unit 1 (54 KB)
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(1)
Title
:
SHORT FORM HGFA WITH FIRST KUNITZ DOMAIN FROM HAI-1
Authors
:
S. Shia, J. Stamos, D. Kirchhofer, B. Fan, J. Wu, R. T. Corpuz, L. Santell R. A. Lazarus, C. Eigenbrot
Date
:
21 Dec 04 (Deposition) - 15 Feb 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,I
Biol. Unit 1: A,I (1x)
Keywords
:
Hydrolase/Inhibitor, Hydrolase-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Shia, J. Stamos, D. Kirchhofer, B. Fan, J. Wu, R. T. Corpuz, L. Santell, R. A. Lazarus, C. Eigenbrot
Conformational Lability In Serine Protease Active Sites: Structures Of Hepatocyte Growth Factor Activator (Hgfa) Alone And With The Inhibitory Domain From Hgfa Inhibitor-1B
J. Mol. Biol. V. 346 1335 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:451 , ARG I:265 , TYR I:280 , HOH I:327
BINDING SITE FOR RESIDUE PO4 I 304
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024294 (R509H, chain A, )
2: VAR_024295 (R644Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024294
R
509
H
HGFA_HUMAN
Polymorphism
16844401
A
R
509
H
2
UniProt
VAR_024295
R
644
Q
HGFA_HUMAN
Polymorphism
2498323
A
R
644
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: BPTI_KUNITZ_2 (I:250-300|-)
2: BPTI_KUNITZ_1 (I:278-296|-)
3: TRYPSIN_DOM (A:408-646)
4: TRYPSIN_HIS (A:443-448)
5: TRYPSIN_SER (A:592-603)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BPTI_KUNITZ_2
PS50279
Pancreatic trypsin inhibitor (Kunitz) family profile.
SPIT1_HUMAN
250-300
391-441
1
I:250-300
-
2
BPTI_KUNITZ_1
PS00280
Pancreatic trypsin inhibitor (Kunitz) family signature.
SPIT1_HUMAN
278-296
419-437
1
I:278-296
-
3
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
HGFA_HUMAN
408-646
1
A:408-646
4
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
HGFA_HUMAN
443-448
1
A:443-448
5
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
HGFA_HUMAN
592-603
1
A:592-603
[
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Exons
(7, 7)
Info
All Exons
Exon 1.4 (I:238-248 (gaps))
Exon 1.5b (I:248-303)
Exon 2.10b (A:393-452 (gaps))
Exon 2.11 (A:452-499)
Exon 2.12 (A:499-546)
Exon 2.13b (A:546-595)
Exon 2.14c (A:596-646)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5b
3: Boundary 1.5b/1.6
4: Boundary 2.9a/2.10b
5: Boundary 2.10b/2.11
6: Boundary 2.11/2.12
7: Boundary 2.12/2.13b
8: Boundary 2.13b/2.14c
9: Boundary 2.14c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000344051
1
ENSE00001383728
chr15:
41136241-41136384
144
SPIT1_HUMAN
-
0
0
-
-
1.2b
ENST00000344051
2b
ENSE00001372531
chr15:
41136688-41137227
540
SPIT1_HUMAN
1-159
159
0
-
-
1.3
ENST00000344051
3
ENSE00001100214
chr15:
41145322-41145449
128
SPIT1_HUMAN
159-201
43
0
-
-
1.4
ENST00000344051
4
ENSE00001100225
chr15:
41145687-41145825
139
SPIT1_HUMAN
202-248
47
1
I:238-248 (gaps)
23
1.5b
ENST00000344051
5b
ENSE00001100217
chr15:
41145909-41146127
219
SPIT1_HUMAN
248-321
74
1
I:248-303
56
1.6
ENST00000344051
6
ENSE00001100211
chr15:
41146258-41146284
27
SPIT1_HUMAN
321-330
10
0
-
-
1.7
ENST00000344051
7
ENSE00001100221
chr15:
41146595-41146720
126
SPIT1_HUMAN
330-372
43
0
-
-
1.8
ENST00000344051
8
ENSE00001100216
chr15:
41146837-41146887
51
SPIT1_HUMAN
372-389
18
0
-
-
1.9
ENST00000344051
9
ENSE00001100215
chr15:
41148090-41148260
171
SPIT1_HUMAN
389-446
58
0
-
-
1.10
ENST00000344051
10
ENSE00001100224
chr15:
41148474-41148521
48
SPIT1_HUMAN
446-462
17
0
-
-
1.11b
ENST00000344051
11b
ENSE00001865623
chr15:
41148968-41150405
1438
SPIT1_HUMAN
462-529
68
0
-
-
2.1a
ENST00000382774
1a
ENSE00001493344
chr4:
3443614-3443845
232
HGFA_HUMAN
1-39
39
0
-
-
2.2
ENST00000382774
2
ENSE00000699356
chr4:
3444459-3444639
181
HGFA_HUMAN
40-100
61
0
-
-
2.3
ENST00000382774
3
ENSE00000699357
chr4:
3444777-3444873
97
HGFA_HUMAN
100-132
33
0
-
-
2.4
ENST00000382774
4
ENSE00000699358
chr4:
3445068-3445147
80
HGFA_HUMAN
132-159
28
0
-
-
2.5
ENST00000382774
5
ENSE00000699359
chr4:
3445766-3445888
123
HGFA_HUMAN
159-200
42
0
-
-
2.6a
ENST00000382774
6a
ENSE00000699360
chr4:
3446038-3446169
132
HGFA_HUMAN
200-244
45
0
-
-
2.7
ENST00000382774
7
ENSE00001267259
chr4:
3446350-3446460
111
HGFA_HUMAN
244-281
38
0
-
-
2.8
ENST00000382774
8
ENSE00001267254
chr4:
3446546-3446720
175
HGFA_HUMAN
281-339
59
0
-
-
2.9a
ENST00000382774
9a
ENSE00000699364
chr4:
3446992-3447077
86
HGFA_HUMAN
339-368
30
0
-
-
2.10b
ENST00000382774
10b
ENSE00000699365
chr4:
3447769-3448021
253
HGFA_HUMAN
368-452
85
1
A:393-452 (gaps)
60
2.11
ENST00000382774
11
ENSE00000699367
chr4:
3449219-3449358
140
HGFA_HUMAN
452-499
48
1
A:452-499
48
2.12
ENST00000382774
12
ENSE00000699371
chr4:
3449622-3449762
141
HGFA_HUMAN
499-546
48
1
A:499-546
48
2.13b
ENST00000382774
13b
ENSE00000699372
chr4:
3449855-3450003
149
HGFA_HUMAN
546-595
50
1
A:546-595
50
2.14c
ENST00000382774
14c
ENSE00001493333
chr4:
3450964-3451211
248
HGFA_HUMAN
596-655
60
1
A:596-646
51
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1yc0i_ (I:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
BPTI-like
(161)
Superfamily
:
BPTI-like
(161)
Family
:
automated matches
(24)
Protein domain
:
automated matches
(24)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1yc0i_
I:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1yc0A01 (A:408-419,A:520-633)
1b: CATH_1yc0A02 (A:420-519,A:634-646)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1yc0A01
A:408-419,A:520-633
1b
1yc0A02
A:420-519,A:634-646
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Trypsin_1yc0A01 (A:408-641)
2a: PFAM_Kunitz_BPTI_1yc0I01 (I:249-301)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Homo sapiens (Human)
(339)
1a
Trypsin-1yc0A01
A:408-641
Clan
:
Protease_inhib
(47)
Family
:
Kunitz_BPTI
(45)
Homo sapiens (Human)
(8)
2a
Kunitz_BPTI-1yc0I01
I:249-301
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Asymmetric Unit 1
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