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Getting 'Exon' information from database.
1YBW
Asym. Unit
Info
Asym.Unit (85 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (42 KB)
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(1)
Title
:
PROTEASE DOMAIN OF HGFA WITH NO INHIBITOR
Authors
:
S. Shia, J. Stamos, D. Kirchhofer, B. Fan, J. Wu, R. T. Corpuz, L. Santell R. A. Lazarus, C. Eigenbrot
Date
:
21 Dec 04 (Deposition) - 15 Feb 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Shia, J. Stamos, D. Kirchhofer, B. Fan, J. Wu, R. T. Corpuz, L. Santell, R. A. Lazarus, C. Eigenbrot
Conformational Lability In Serine Protease Active Sites: Structures Of Hepatocyte Growth Factor Activator (Hgfa) Alone And With The Inhibitory Domain From Hgfa Inhibitor-1B
J. Mol. Biol. V. 346 1335 2005
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:54 , PHE A:467 , ASN A:468
BINDING SITE FOR RESIDUE NAG A 741
2
AC2
SOFTWARE
HOH B:153 , PHE B:467 , ASN B:468
BINDING SITE FOR RESIDUE NAG B 742
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024294 (R509H, chain A/B, )
2: VAR_024295 (R644Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024294
R
509
H
HGFA_HUMAN
Polymorphism
16844401
A/B
R
509
H
2
UniProt
VAR_024295
R
644
Q
HGFA_HUMAN
Polymorphism
2498323
A/B
R
644
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:408-645,B:408-645)
2: TRYPSIN_HIS (A:443-448,B:443-448)
3: TRYPSIN_SER (A:592-603,B:592-603)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
HGFA_HUMAN
408-646
2
A:408-645
B:408-645
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
HGFA_HUMAN
443-448
2
A:443-448
B:443-448
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
HGFA_HUMAN
592-603
2
A:592-603
B:592-603
[
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Exons
(5, 10)
Info
All Exons
Exon 1.10b (A:393-452 (gaps) | B:393-452 (gaps...)
Exon 1.11 (A:452-499 | B:452-499)
Exon 1.12 (A:499-546 | B:499-546)
Exon 1.13b (A:546-595 | B:546-595)
Exon 1.14c (A:596-645 | B:596-645)
View:
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All Exon Boundaries
1: Boundary 1.9a/1.10b
2: Boundary 1.10b/1.11
3: Boundary 1.11/1.12
4: Boundary 1.12/1.13b
5: Boundary 1.13b/1.14c
6: Boundary 1.14c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000382774
1a
ENSE00001493344
chr4:
3443614-3443845
232
HGFA_HUMAN
1-39
39
0
-
-
1.2
ENST00000382774
2
ENSE00000699356
chr4:
3444459-3444639
181
HGFA_HUMAN
40-100
61
0
-
-
1.3
ENST00000382774
3
ENSE00000699357
chr4:
3444777-3444873
97
HGFA_HUMAN
100-132
33
0
-
-
1.4
ENST00000382774
4
ENSE00000699358
chr4:
3445068-3445147
80
HGFA_HUMAN
132-159
28
0
-
-
1.5
ENST00000382774
5
ENSE00000699359
chr4:
3445766-3445888
123
HGFA_HUMAN
159-200
42
0
-
-
1.6a
ENST00000382774
6a
ENSE00000699360
chr4:
3446038-3446169
132
HGFA_HUMAN
200-244
45
0
-
-
1.7
ENST00000382774
7
ENSE00001267259
chr4:
3446350-3446460
111
HGFA_HUMAN
244-281
38
0
-
-
1.8
ENST00000382774
8
ENSE00001267254
chr4:
3446546-3446720
175
HGFA_HUMAN
281-339
59
0
-
-
1.9a
ENST00000382774
9a
ENSE00000699364
chr4:
3446992-3447077
86
HGFA_HUMAN
339-368
30
0
-
-
1.10b
ENST00000382774
10b
ENSE00000699365
chr4:
3447769-3448021
253
HGFA_HUMAN
368-452
85
2
A:393-452 (gaps)
B:393-452 (gaps)
60
60
1.11
ENST00000382774
11
ENSE00000699367
chr4:
3449219-3449358
140
HGFA_HUMAN
452-499
48
2
A:452-499
B:452-499
48
48
1.12
ENST00000382774
12
ENSE00000699371
chr4:
3449622-3449762
141
HGFA_HUMAN
499-546
48
2
A:499-546
B:499-546
48
48
1.13b
ENST00000382774
13b
ENSE00000699372
chr4:
3449855-3450003
149
HGFA_HUMAN
546-595
50
2
A:546-595
B:546-595
50
50
1.14c
ENST00000382774
14c
ENSE00001493333
chr4:
3450964-3451211
248
HGFA_HUMAN
596-655
60
2
A:596-645
B:596-645
50
50
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ybwA01 (A:408-419,A:520-633)
1b: CATH_1ybwB01 (B:408-419,B:520-633)
1c: CATH_1ybwA02 (A:420-519,A:634-645)
1d: CATH_1ybwB02 (B:420-519,B:634-645)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1ybwA01
A:408-419,A:520-633
1b
1ybwB01
B:408-419,B:520-633
1c
1ybwA02
A:420-519,A:634-645
1d
1ybwB02
B:420-519,B:634-645
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Trypsin_1ybwB01 (B:408-641)
1b: PFAM_Trypsin_1ybwB02 (B:408-641)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Homo sapiens (Human)
(339)
1a
Trypsin-1ybwB01
B:408-641
1b
Trypsin-1ybwB02
B:408-641
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