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1YB1
Asym. Unit
Info
Asym.Unit (90 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (165 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE XI
Authors
:
P. Lukacik, G. Bunkoczi, K. Kavanagh, S. Ng, F. Von Delft, J. Bray, A. Ed C. Arrowsmith, M. Sundstrom, U. Oppermann, Structural Genomics Co (Sgc)
Date
:
18 Dec 04 (Deposition) - 28 Dec 04 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Short Chain Dehydrogenase, Hydroxysteroid Dehydrogenase, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Lukacik, G. Bunkoczi, K. Kavanagh, S. Ng, F. Von Delft, J. Bray, A. Edwards, C. Arrowsmith, M. Sundstrom, U. Oppermann
Crystal Structure Of Human 17-Beta-Hydroxysteroid Dehydrogenase Type Xi.
To Be Published
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ANDROSTERONE (AOIa)
1b: ANDROSTERONE (AOIb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
3a: GLYCEROL (GOLa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AOI
2
Ligand/Ion
ANDROSTERONE
2
CL
6
Ligand/Ion
CHLORIDE ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:214 , PHE A:215 , SER A:256 , HOH A:724
BINDING SITE FOR RESIDUE CL A 401
02
AC2
SOFTWARE
ASP A:62 , ILE A:63 , CL A:405 , HOH A:780
BINDING SITE FOR RESIDUE CL A 402
03
AC3
SOFTWARE
ASN B:214 , PHE B:215 , SER B:256 , HOH B:665
BINDING SITE FOR RESIDUE CL B 403
04
AC4
SOFTWARE
ILE B:43
BINDING SITE FOR RESIDUE CL B 404
05
AC5
SOFTWARE
CYS A:89 , CL A:402 , HOH A:792
BINDING SITE FOR RESIDUE CL A 405
06
AC6
SOFTWARE
HOH A:793 , GLN B:128
BINDING SITE FOR RESIDUE CL B 406
07
AC7
SOFTWARE
GLY A:42 , ILE A:43 , ALA A:168 , ALA A:169 , HOH A:741 , HOH A:748 , HOH A:818
BINDING SITE FOR RESIDUE SO4 A 702
08
AC8
SOFTWARE
ARG A:92 , HOH A:793 , HOH A:849 , THR B:127 , PRO B:130
BINDING SITE FOR RESIDUE SO4 A 703
09
AC9
SOFTWARE
ILE A:267 , HOH A:704 , SER B:122 , LYS B:148 , THR B:155 , LEU B:194 , GLU B:197 , HOH B:602 , HOH B:641
BINDING SITE FOR RESIDUE AOI B 601
10
BC1
SOFTWARE
GLU A:197 , LEU B:178 , HOH B:618
BINDING SITE FOR RESIDUE AOI A 602
11
BC2
SOFTWARE
ILE B:63 , VAL B:87 , ASP B:88 , CYS B:89 , SER B:90 , GLY B:117 , VAL B:138 , HOH B:629
BINDING SITE FOR RESIDUE GOL B 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(7, 14)
Info
All Exons
Exon 1.1a (A:25-65 | B:25-65)
Exon 1.3 (A:66-101 | B:66-101)
Exon 1.4b (A:102-145 | B:102-145)
Exon 1.7 (A:146-181 (gaps) | B:146-181 (gaps...)
Exon 1.9 (A:181-227 | B:181-227)
Exon 1.11a (A:227-266 | B:227-266)
Exon 1.12e (A:266-268 | B:266-268)
View:
Select:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.4b
4: Boundary 1.4b/1.7
5: Boundary 1.7/1.9
6: Boundary 1.9/1.11a
7: Boundary 1.11a/1.12e
8: Boundary 1.12e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000358290
1a
ENSE00001405112
chr4:
88312538-88312013
526
DHB11_HUMAN
1-70
70
2
A:25-65
B:25-65
41
41
1.3
ENST00000358290
3
ENSE00001432115
chr4:
88303514-88303407
108
DHB11_HUMAN
71-106
36
2
A:66-101
B:66-101
36
36
1.4b
ENST00000358290
4b
ENSE00001422137
chr4:
88295982-88295851
132
DHB11_HUMAN
107-150
44
2
A:102-145
B:102-145
44
44
1.7
ENST00000358290
7
ENSE00001418052
chr4:
88293967-88293861
107
DHB11_HUMAN
151-186
36
2
A:146-181 (gaps)
B:146-181 (gaps)
36
36
1.9
ENST00000358290
9
ENSE00001405922
chr4:
88278568-88278431
138
DHB11_HUMAN
186-232
47
2
A:181-227
B:181-227
47
47
1.11a
ENST00000358290
11a
ENSE00001432509
chr4:
88261758-88261642
117
DHB11_HUMAN
232-271
40
2
A:227-266
B:227-266
40
40
1.12e
ENST00000358290
12e
ENSE00001428384
chr4:
88258518-88257762
757
DHB11_HUMAN
271-300
30
2
A:266-268
B:266-268
3
3
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1yb1a_ (A:)
1b: SCOP_d1yb1b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
17-beta-hydroxysteroid dehydrogenase type XI
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1yb1a_
A:
1b
d1yb1b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_adh_short_1yb1B01 (B:32-199)
1b: PFAM_adh_short_1yb1B02 (B:32-199)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Homo sapiens (Human)
(21)
1a
adh_short-1yb1B01
B:32-199
1b
adh_short-1yb1B02
B:32-199
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