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1YAZ
Asym. Unit
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Asym.Unit (31 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
AZIDE-BOUND YEAST CU(II)/ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE (298K) STRUCTURE
Authors
:
P. J. Hart, M. M. Balbirnie, N. L. Ogihara, A. M. Nersissian, M. S. Weiss, J. S. Valentine, D. Eisenberg
Date
:
23 Dec 98 (Deposition) - 12 Jan 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Superoxide Acceptor, Copper, Zinc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Hart, M. M. Balbirnie, N. L. Ogihara, A. M. Nersissian, M. S. Weiss, J. S. Valentine, D. Eisenberg
A Structure-Based Mechanism For Copper-Zinc Superoxide Dismutase.
Biochemistry V. 38 2167 1999
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: AZIDE ION (AZIa)
2a: COPPER (II) ION (CUa)
3a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AZI
1
Ligand/Ion
AZIDE ION
2
CU
1
Ligand/Ion
COPPER (II) ION
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: CU (AUTHOR)
5: ZN (AUTHOR)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:46 , HIS A:48 , HIS A:63 , HIS A:120 , AZI A:156
BINDING SITE FOR RESIDUE CU A 154
2
AC2
SOFTWARE
HIS A:63 , HIS A:71 , HIS A:80 , ASP A:83
BINDING SITE FOR RESIDUE ZN A 155
3
AC3
SOFTWARE
HIS A:48 , PRO A:62 , HIS A:63 , HIS A:120 , THR A:137 , ARG A:143 , CU A:154
BINDING SITE FOR RESIDUE AZI A 156
4
CU
AUTHOR
CU A:154 , HIS A:46 , HIS A:48 , HIS A:63 , HIS A:120 , AZI A:156
COPPER BINDING SITE
5
ZN
AUTHOR
ZN A:155 , HIS A:63 , HIS A:71 , HIS A:80 , ASP A:83
ZINC BINDING SITE
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: SOD_CU_ZN_1 (A:44-54)
2: SOD_CU_ZN_2 (A:138-149)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_CU_ZN_1
PS00087
Copper/Zinc superoxide dismutase signature 1.
SODC_YEAST
45-55
1
A:44-54
2
SOD_CU_ZN_2
PS00332
Copper/Zinc superoxide dismutase signature 2.
SODC_YEAST
139-150
1
A:138-149
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:1-153)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YJR104C
1
YJR104C.1
X:623002-622538
465
SODC_YEAST
1-154
154
1
A:1-153
153
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1yaza_ (A:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cu,Zn superoxide dismutase-like
(165)
Family
:
Cu,Zn superoxide dismutase-like
(158)
Protein domain
:
Cu,Zn superoxide dismutase, SOD
(134)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(12)
1a
d1yaza_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1yazA00 (A:1-153)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.200, no name defined]
(125)
Baker's yeast (Saccharomyces cerevisiae)
(13)
1a
1yazA00
A:1-153
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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