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1YAU
Asym. Unit
Info
Asym.Unit (743 KB)
Biol.Unit 1, α-C (1.4 MB)
Biol.Unit 1 (1.4 MB)
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(1)
Title
:
STRUCTURE OF ARCHEABACTERIAL 20S PROTEASOME- PA26 COMPLEX
Authors
:
A. Forster, E. I. Masters, F. G. Whitby, H. Robinson, C. P. Hill
Date
:
17 Dec 04 (Deposition) - 26 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U (2x)
Keywords
:
Proteasome 20S, Pa26 Proteasome Activator 11S, Hydrolase-Hydrolase Activator Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Forster, E. I. Masters, F. G. Whitby, H. Robinson, C. P. Hill
The 1. 9 A Structure Of A Proteasome-11S Activator Complex And Implications For Proteasome-Pan/Pa700 Interactions.
Mol. Cell V. 18 589 2005
[
close entry info
]
Hetero Components
(2, 32)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
SO4
25
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:110 , LYS A:114 , SER B:63 , ILE B:64 , GLU B:65 , GLN B:68 , HOH B:3054 , ARG H:71
BINDING SITE FOR RESIDUE SO4 B 3001
02
AC2
SOFTWARE
GLU B:110 , LYS B:114 , ILE C:64 , GLU C:65 , GLN C:68 , HOH C:3060 , ARG I:71 , HOH I:3117
BINDING SITE FOR RESIDUE SO4 C 3002
03
AC3
SOFTWARE
GLU C:110 , LYS C:114 , SER D:63 , ILE D:64 , GLU D:65 , GLN D:68 , ARG J:71
BINDING SITE FOR RESIDUE SO4 D 3003
04
AC4
SOFTWARE
GLU D:110 , LYS D:114 , SER E:63 , GLU E:65 , GLN E:68
BINDING SITE FOR RESIDUE SO4 E 3004
05
AC5
SOFTWARE
GLU E:110 , LYS E:114 , ILE F:64 , GLU F:65 , GLN F:68
BINDING SITE FOR RESIDUE SO4 F 3005
06
AC6
SOFTWARE
GLU F:110 , LYS F:114 , SER G:63 , ILE G:64 , GLU G:65 , GLN G:68 , ARG M:71
BINDING SITE FOR RESIDUE SO4 G 3006
07
AC7
SOFTWARE
SER A:63 , ILE A:64 , GLU A:65 , GLN A:68 , HOH A:3046 , HOH A:3065 , GLU G:110 , LYS G:114 , ARG N:71
BINDING SITE FOR RESIDUE SO4 A 3007
08
AC8
SOFTWARE
THR H:1 , GLY H:47 , GLY H:128 , SER H:129 , HOH H:3044 , HOH H:3082
BINDING SITE FOR RESIDUE SO4 H 3008
09
AC9
SOFTWARE
THR N:1 , GLY N:47 , GLY N:128 , SER N:129 , HOH N:3079 , HOH N:3124
BINDING SITE FOR RESIDUE SO4 N 3009
10
BC1
SOFTWARE
THR M:1 , GLY M:47 , GLY M:128 , SER M:129 , HOH M:3100
BINDING SITE FOR RESIDUE SO4 M 3010
11
BC2
SOFTWARE
THR I:1 , GLY I:47 , GLY I:128 , SER I:129 , HOH I:3055 , HOH I:3067 , HOH I:3074 , HOH I:3090
BINDING SITE FOR RESIDUE SO4 I 3011
12
BC3
SOFTWARE
THR J:1 , GLY J:47 , GLY J:128 , SER J:129 , HOH J:3100
BINDING SITE FOR RESIDUE SO4 J 3012
13
BC4
SOFTWARE
THR K:1 , GLY K:47 , GLY K:128 , SER K:129 , HOH K:3080 , HOH K:3086
BINDING SITE FOR RESIDUE SO4 K 3013
14
BC5
SOFTWARE
THR L:1 , ALA L:46 , GLY L:47 , GLY L:128 , SER L:129 , HOH L:3033 , HOH L:3064
BINDING SITE FOR RESIDUE SO4 L 3014
15
BC6
SOFTWARE
TYR A:103 , ARG A:115 , ARG H:70 , HOH H:3020 , HOH H:3027 , HOH H:3106
BINDING SITE FOR RESIDUE SO4 H 3015
16
BC7
SOFTWARE
TYR B:103 , ARG B:115 , ARG I:70 , HOH I:3034 , HOH I:3065 , HOH I:3118
BINDING SITE FOR RESIDUE SO4 I 3016
17
BC8
SOFTWARE
TYR C:103 , ARG C:115 , ARG J:70 , HOH J:3029 , HOH J:3056 , HOH J:3110
BINDING SITE FOR RESIDUE SO4 J 3017
18
BC9
SOFTWARE
TYR D:103 , ARG D:115 , ARG K:70 , HOH K:3034 , HOH K:3035 , HOH K:3096
BINDING SITE FOR RESIDUE SO4 K 3018
19
CC1
SOFTWARE
TYR E:103 , ARG E:115 , ARG L:70 , HOH L:3036 , HOH L:3055 , HOH L:3067
BINDING SITE FOR RESIDUE SO4 L 3019
20
CC2
SOFTWARE
TYR F:103 , ARG M:70 , HOH M:3039 , HOH M:3055
BINDING SITE FOR RESIDUE SO4 M 3020
21
CC3
SOFTWARE
TYR G:103 , ARG G:115 , ARG N:70 , HOH N:3034 , HOH N:3051 , HOH N:3128
BINDING SITE FOR RESIDUE SO4 N 3021
22
CC4
SOFTWARE
GOL M:2002 , GLU N:77 , ALA N:80 , THR N:81 , PHE N:111 , SER N:119 , HOH N:3054 , HOH N:3072
BINDING SITE FOR RESIDUE SO4 N 3022
23
CC5
SOFTWARE
ARG H:57 , GOL H:2004 , GLU I:77 , ALA I:80 , THR I:81 , PHE I:111 , SER I:119 , HOH I:3064
BINDING SITE FOR RESIDUE SO4 I 3023
24
CC6
SOFTWARE
GLN L:53 , ARG L:57 , GOL L:2001 , GLU M:77 , THR M:81 , SER M:119 , HOH M:3071 , HOH M:3078
BINDING SITE FOR RESIDUE SO4 M 3024
25
CC7
SOFTWARE
LYS M:32 , PHE M:35 , GLN M:36 , LYS M:60 , HOH M:3116 , HOH M:3124
BINDING SITE FOR RESIDUE SO4 M 3025
26
CC8
SOFTWARE
GLN L:53 , ARG L:57 , LYS L:60 , HOH L:3087 , HOH L:3091 , SO4 M:3024
BINDING SITE FOR RESIDUE GOL L 2001
27
CC9
SOFTWARE
GLN M:53 , ARG M:57 , HOH M:3047 , SO4 N:3022
BINDING SITE FOR RESIDUE GOL M 2002
28
DC1
SOFTWARE
GLN N:53 , ARG N:57 , LYS N:60
BINDING SITE FOR RESIDUE GOL N 2003
29
DC2
SOFTWARE
GLN H:53 , VAL H:56 , ARG H:57 , LYS H:60 , HOH H:3099 , SO4 I:3023 , HOH I:3113
BINDING SITE FOR RESIDUE GOL H 2004
30
DC3
SOFTWARE
GLN I:53 , VAL I:56 , ARG I:57 , LYS I:60 , HOH I:3069 , HOH I:3085
BINDING SITE FOR RESIDUE GOL I 2005
31
DC4
SOFTWARE
GLN J:53 , ARG J:57 , LYS J:60 , HOH J:3064
BINDING SITE FOR RESIDUE GOL J 2006
32
DC5
SOFTWARE
GLN K:53 , VAL K:56 , ARG K:57 , LYS K:60
BINDING SITE FOR RESIDUE GOL K 2007
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 14)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_BETA_1 (H:4-51,I:4-51,J:4-51,K:4-51,L:4-51...)
2: PROTEASOME_ALPHA_2 (A:23-233,B:23-233,C:23-233,D:23-23...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_BETA_1
PS00854
Proteasome beta-type subunits signature.
PSB_THEAC
12-59
7
H:4-51
I:4-51
J:4-51
K:4-51
L:4-51
M:4-51
N:4-51
2
PROTEASOME_ALPHA_2
PS51475
Proteasome alpha-type subunit profile.
PSA_THEAC
23-233
7
A:23-233
B:23-233
C:23-233
D:23-233
E:23-233
F:23-233
G:23-233
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 21)
Info
All SCOP Domains
1a: SCOP_d1yauo_ (O:)
1b: SCOP_d1yaup_ (P:)
1c: SCOP_d1yauq_ (Q:)
1d: SCOP_d1yaur_ (R:)
1e: SCOP_d1yaus_ (S:)
1f: SCOP_d1yaut_ (T:)
1g: SCOP_d1yauu_ (U:)
2a: SCOP_d1yaua_ (A:)
2b: SCOP_d1yaub_ (B:)
2c: SCOP_d1yauc_ (C:)
2d: SCOP_d1yaud_ (D:)
2e: SCOP_d1yaue_ (E:)
2f: SCOP_d1yauf_ (F:)
2g: SCOP_d1yaug_ (G:)
2h: SCOP_d1yauh_ (H:)
2i: SCOP_d1yaui_ (I:)
2j: SCOP_d1yauj_ (J:)
2k: SCOP_d1yauk_ (K:)
2l: SCOP_d1yaul_ (L:)
2m: SCOP_d1yaum_ (M:)
2n: SCOP_d1yaun_ (N:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Proteasome activator
(7)
Family
:
Proteasome activator
(7)
Protein domain
:
automated matches
(5)
Trypanosome (Trypanosoma brucei) [TaxId: 5691]
(5)
1a
d1yauo_
O:
1b
d1yaup_
P:
1c
d1yauq_
Q:
1d
d1yaur_
R:
1e
d1yaus_
S:
1f
d1yaut_
T:
1g
d1yauu_
U:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Proteasome subunits
(222)
Protein domain
:
automated matches
(78)
Thermoplasma acidophilum [TaxId: 2303]
(7)
2a
d1yaua_
A:
2b
d1yaub_
B:
2c
d1yauc_
C:
2d
d1yaud_
D:
2e
d1yaue_
E:
2f
d1yauf_
F:
2g
d1yaug_
G:
2h
d1yauh_
H:
2i
d1yaui_
I:
2j
d1yauj_
J:
2k
d1yauk_
K:
2l
d1yaul_
L:
2m
d1yaum_
M:
2n
d1yaun_
N:
[
close SCOP info
]
CATH Domains
(2, 21)
Info
all CATH domains
1a: CATH_1yauA00 (A:12-233)
1b: CATH_1yauB00 (B:12-233)
1c: CATH_1yauC00 (C:12-233)
1d: CATH_1yauD00 (D:12-233)
1e: CATH_1yauE00 (E:12-233)
1f: CATH_1yauF00 (F:12-233)
1g: CATH_1yauG00 (G:12-233)
1h: CATH_1yauH00 (H:1-203)
1i: CATH_1yauI00 (I:1-203)
1j: CATH_1yauJ00 (J:1-203)
1k: CATH_1yauK00 (K:1-203)
1l: CATH_1yauL00 (L:1-203)
1m: CATH_1yauM00 (M:1-203)
1n: CATH_1yauN00 (N:1-203)
2a: CATH_1yauO01 (O:4-221)
2b: CATH_1yauP01 (P:4-221)
2c: CATH_1yauQ01 (Q:4-221)
2d: CATH_1yauR01 (R:4-221)
2e: CATH_1yauS01 (S:4-221)
2f: CATH_1yauT01 (T:4-221)
2g: CATH_1yauU01 (U:4-221)
View:
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Classes
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)
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)
Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Thermoplasma acidophilum. Organism_taxid: 2303.
(3)
1a
1yauA00
A:12-233
1b
1yauB00
B:12-233
1c
1yauC00
C:12-233
1d
1yauD00
D:12-233
1e
1yauE00
E:12-233
1f
1yauF00
F:12-233
1g
1yauG00
G:12-233
1h
1yauH00
H:1-203
1i
1yauI00
I:1-203
1j
1yauJ00
J:1-203
1k
1yauK00
K:1-203
1l
1yauL00
L:1-203
1m
1yauM00
M:1-203
1n
1yauN00
N:1-203
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.180, no name defined]
(10)
Thermoplasma acidophilum. Organism_taxid: 2303.
(2)
2a
1yauO01
O:4-221
2b
1yauP01
P:4-221
2c
1yauQ01
Q:4-221
2d
1yauR01
R:4-221
2e
1yauS01
S:4-221
2f
1yauT01
T:4-221
2g
1yauU01
U:4-221
[
close CATH info
]
Pfam Domains
(2, 21)
Info
all PFAM domains
1a: PFAM_Proteasome_1yauG01 (G:31-216)
1b: PFAM_Proteasome_1yauG02 (G:31-216)
1c: PFAM_Proteasome_1yauG03 (G:31-216)
1d: PFAM_Proteasome_1yauG04 (G:31-216)
1e: PFAM_Proteasome_1yauG05 (G:31-216)
1f: PFAM_Proteasome_1yauG06 (G:31-216)
1g: PFAM_Proteasome_1yauG07 (G:31-216)
1h: PFAM_Proteasome_1yauN01 (N:1-178)
1i: PFAM_Proteasome_1yauN02 (N:1-178)
1j: PFAM_Proteasome_1yauN03 (N:1-178)
1k: PFAM_Proteasome_1yauN04 (N:1-178)
1l: PFAM_Proteasome_1yauN05 (N:1-178)
1m: PFAM_Proteasome_1yauN06 (N:1-178)
1n: PFAM_Proteasome_1yauN07 (N:1-178)
2a: PFAM_Proteasome_A_N_1yauG08 (G:12-30)
2b: PFAM_Proteasome_A_N_1yauG09 (G:12-30)
2c: PFAM_Proteasome_A_N_1yauG10 (G:12-30)
2d: PFAM_Proteasome_A_N_1yauG11 (G:12-30)
2e: PFAM_Proteasome_A_N_1yauG12 (G:12-30)
2f: PFAM_Proteasome_A_N_1yauG13 (G:12-30)
2g: PFAM_Proteasome_A_N_1yauG14 (G:12-30)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NTN
(93)
Family
:
Proteasome
(36)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(8)
1a
Proteasome-1yauG01
G:31-216
1b
Proteasome-1yauG02
G:31-216
1c
Proteasome-1yauG03
G:31-216
1d
Proteasome-1yauG04
G:31-216
1e
Proteasome-1yauG05
G:31-216
1f
Proteasome-1yauG06
G:31-216
1g
Proteasome-1yauG07
G:31-216
1h
Proteasome-1yauN01
N:1-178
1i
Proteasome-1yauN02
N:1-178
1j
Proteasome-1yauN03
N:1-178
1k
Proteasome-1yauN04
N:1-178
1l
Proteasome-1yauN05
N:1-178
1m
Proteasome-1yauN06
N:1-178
1n
Proteasome-1yauN07
N:1-178
Clan
:
no clan defined [family: Proteasome_A_N]
(20)
Family
:
Proteasome_A_N
(20)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(8)
2a
Proteasome_A_N-1yauG08
G:12-30
2b
Proteasome_A_N-1yauG09
G:12-30
2c
Proteasome_A_N-1yauG10
G:12-30
2d
Proteasome_A_N-1yauG11
G:12-30
2e
Proteasome_A_N-1yauG12
G:12-30
2f
Proteasome_A_N-1yauG13
G:12-30
2g
Proteasome_A_N-1yauG14
G:12-30
[
close Pfam info
]
Atom Selection
(currently selected atoms:
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Chain G
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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