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1YAR
Asym. Unit
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Asym.Unit (801 KB)
Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
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(1)
Title
:
STRUCTURE OF ARCHEABACTERIAL 20S PROTEASOME MUTANT D9S- PA26 COMPLEX
Authors
:
A. Forster, E. I. Masters, F. G. Whitby, H. Robinson, C. P. Hill
Date
:
17 Dec 04 (Deposition) - 26 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U (2x)
Keywords
:
Proteasome 20S, Pa26 Proteasome Activator 11S, Hydrolase-Hydrolase Activator Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Forster, E. I. Masters, F. G. Whitby, H. Robinson, C. P. Hill
The 1. 9 A Structure Of A Proteasome-11S Activator Complex And Implications For Proteasome-Pan/Pa700 Interactions.
Mol. Cell V. 18 589 2005
[
close entry info
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Hetero Components
(2, 28)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
SO4
21
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:110 , LYS A:114 , HOH A:4049 , ILE B:64 , GLU B:65 , GLN B:68 , ARG H:71
BINDING SITE FOR RESIDUE SO4 A 4001
02
AC2
SOFTWARE
GLU B:110 , LYS B:114 , HOH B:4086 , ILE C:64 , GLU C:65 , GLN C:68 , ARG I:71
BINDING SITE FOR RESIDUE SO4 B 4002
03
AC3
SOFTWARE
GLU C:110 , LYS C:114 , ILE D:64 , GLU D:65 , GLN D:68 , ARG J:71
BINDING SITE FOR RESIDUE SO4 C 4003
04
AC4
SOFTWARE
GLU D:110 , LYS D:114 , ILE E:64 , GLU E:65 , GLN E:68
BINDING SITE FOR RESIDUE SO4 D 4004
05
AC5
SOFTWARE
GLU E:110 , LYS E:114 , SER F:63 , ILE F:64 , GLU F:65 , GLN F:68 , HOH F:4072 , ARG L:71
BINDING SITE FOR RESIDUE SO4 F 4005
06
AC6
SOFTWARE
GLU F:110 , LYS F:114 , SER G:63 , ILE G:64 , GLU G:65 , GLN G:68 , HOH G:4101 , ARG M:71
BINDING SITE FOR RESIDUE SO4 F 4006
07
AC7
SOFTWARE
SER A:63 , GLU A:65 , GLU G:110 , LYS G:114 , HOH G:4049 , ARG N:71
BINDING SITE FOR RESIDUE SO4 G 4007
08
AC8
SOFTWARE
THR H:1 , GLY H:47 , GLY H:128 , SER H:129 , HOH H:5063 , HOH H:5074 , HOH H:5097
BINDING SITE FOR RESIDUE SO4 H 4008
09
AC9
SOFTWARE
THR N:1 , GLY N:47 , GLY N:128 , SER N:129 , HOH N:5062 , HOH N:5122 , HOH N:5173 , HOH N:5177
BINDING SITE FOR RESIDUE SO4 N 4009
10
BC1
SOFTWARE
THR M:1 , GLY M:47 , GLY M:128 , SER M:129 , HOH M:5147 , HOH M:5151 , HOH M:5153
BINDING SITE FOR RESIDUE SO4 M 4010
11
BC2
SOFTWARE
THR I:1 , ALA I:46 , GLY I:47 , GLY I:128 , SER I:129 , HOH I:5073 , HOH I:5074 , HOH I:5078 , HOH I:5158
BINDING SITE FOR RESIDUE SO4 I 4011
12
BC3
SOFTWARE
THR J:1 , ALA J:46 , GLY J:47 , GLY J:128 , SER J:129 , HOH J:5064 , HOH J:5140
BINDING SITE FOR RESIDUE SO4 J 4012
13
BC4
SOFTWARE
THR K:1 , ALA K:46 , GLY K:47 , GLY K:128 , SER K:129 , HOH K:5066 , HOH K:5106 , HOH K:5111 , HOH K:5163
BINDING SITE FOR RESIDUE SO4 K 4013
14
BC5
SOFTWARE
THR L:1 , GLY L:47 , GLY L:128 , SER L:129 , HOH L:5088 , HOH L:5107
BINDING SITE FOR RESIDUE SO4 L 4014
15
BC6
SOFTWARE
TYR A:103 , ARG A:115 , ARG H:70 , HOH H:5013 , HOH H:5044 , HOH H:5067
BINDING SITE FOR RESIDUE SO4 H 4015
16
BC7
SOFTWARE
TYR B:103 , ARG B:115 , HOH B:4045 , HOH B:4056 , HOH B:4141 , GLN I:69 , ARG I:70
BINDING SITE FOR RESIDUE SO4 B 4016
17
BC8
SOFTWARE
TYR C:103 , ARG C:115 , ARG J:70 , HOH J:5021 , HOH J:5036 , HOH J:5097
BINDING SITE FOR RESIDUE SO4 J 4017
18
BC9
SOFTWARE
TYR D:103 , ARG D:115 , GLN K:69 , ARG K:70 , HOH K:5028 , HOH K:5048 , HOH K:5073
BINDING SITE FOR RESIDUE SO4 K 4018
19
CC1
SOFTWARE
TYR E:103 , ARG E:115 , ARG L:70 , HOH L:5047 , HOH L:5054 , HOH L:5154
BINDING SITE FOR RESIDUE SO4 L 4019
20
CC2
SOFTWARE
TYR F:103 , ARG F:115 , ARG M:70 , HOH M:5028 , HOH M:5086 , HOH M:5097
BINDING SITE FOR RESIDUE SO4 M 4020
21
CC3
SOFTWARE
TYR G:103 , ARG G:115 , GLN N:69 , ARG N:70 , HOH N:5033 , HOH N:5093 , HOH N:5110
BINDING SITE FOR RESIDUE SO4 N 4021
22
CC4
SOFTWARE
GLN L:53 , ARG L:57 , LYS L:60 , HOH L:5056 , HOH L:5137 , HOH L:5139
BINDING SITE FOR RESIDUE GOL L 5001
23
CC5
SOFTWARE
GLN M:53 , ARG M:57 , LYS M:60 , HOH M:5034 , HOH M:5107 , HOH N:5089
BINDING SITE FOR RESIDUE GOL M 5002
24
CC6
SOFTWARE
GLN N:53 , VAL N:56 , ARG N:57 , LYS N:60 , HOH N:5058 , HOH N:5092
BINDING SITE FOR RESIDUE GOL N 5003
25
CC7
SOFTWARE
GLN H:53 , ARG H:57 , LYS H:60 , HOH H:5043 , HOH H:5156 , HOH I:5069
BINDING SITE FOR RESIDUE GOL H 5004
26
CC8
SOFTWARE
GLN I:53 , VAL I:56 , ARG I:57 , LYS I:60 , HOH I:5046 , HOH I:5072 , HOH I:5131
BINDING SITE FOR RESIDUE GOL I 5005
27
CC9
SOFTWARE
GLN J:53 , VAL J:56 , ARG J:57 , LYS J:60 , HOH J:5092 , HOH J:5099 , HOH K:5088
BINDING SITE FOR RESIDUE GOL J 5006
28
DC1
SOFTWARE
GLN K:53 , VAL K:56 , ARG K:57 , LYS K:60 , HOH K:5064 , HOH K:5097 , HOH L:5135
BINDING SITE FOR RESIDUE GOL K 5007
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 14)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_BETA_1 (H:4-51,I:4-51,J:4-51,K:4-51,L:4-51...)
2: PROTEASOME_ALPHA_2 (A:23-233,B:23-233,C:23-233,D:23-23...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_BETA_1
PS00854
Proteasome beta-type subunits signature.
PSB_THEAC
12-59
7
H:4-51
I:4-51
J:4-51
K:4-51
L:4-51
M:4-51
N:4-51
2
PROTEASOME_ALPHA_2
PS51475
Proteasome alpha-type subunit profile.
PSA_THEAC
23-233
7
A:23-233
B:23-233
C:23-233
D:23-233
E:23-233
F:23-233
G:23-233
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 21)
Info
All SCOP Domains
1a: SCOP_d1yaro_ (O:)
1b: SCOP_d1yarp_ (P:)
1c: SCOP_d1yarq_ (Q:)
1d: SCOP_d1yarr_ (R:)
1e: SCOP_d1yars_ (S:)
1f: SCOP_d1yart_ (T:)
1g: SCOP_d1yaru_ (U:)
2a: SCOP_d1yara_ (A:)
2b: SCOP_d1yarb_ (B:)
2c: SCOP_d1yark_ (K:)
2d: SCOP_d1yarl_ (L:)
2e: SCOP_d1yarm_ (M:)
2f: SCOP_d1yarn_ (N:)
2g: SCOP_d1yarc_ (C:)
2h: SCOP_d1yard_ (D:)
2i: SCOP_d1yare_ (E:)
2j: SCOP_d1yarf_ (F:)
2k: SCOP_d1yarg_ (G:)
2l: SCOP_d1yarh_ (H:)
2m: SCOP_d1yari_ (I:)
2n: SCOP_d1yarj_ (J:)
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Proteasome activator
(7)
Family
:
Proteasome activator
(7)
Protein domain
:
automated matches
(5)
Trypanosome (Trypanosoma brucei) [TaxId: 5691]
(5)
1a
d1yaro_
O:
1b
d1yarp_
P:
1c
d1yarq_
Q:
1d
d1yarr_
R:
1e
d1yars_
S:
1f
d1yart_
T:
1g
d1yaru_
U:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Proteasome subunits
(222)
Protein domain
:
automated matches
(78)
Thermoplasma acidophilum [TaxId: 2303]
(7)
2a
d1yara_
A:
2b
d1yarb_
B:
2c
d1yark_
K:
2d
d1yarl_
L:
2e
d1yarm_
M:
2f
d1yarn_
N:
2g
d1yarc_
C:
2h
d1yard_
D:
2i
d1yare_
E:
2j
d1yarf_
F:
2k
d1yarg_
G:
2l
d1yarh_
H:
2m
d1yari_
I:
2n
d1yarj_
J:
[
close SCOP info
]
CATH Domains
(2, 21)
Info
all CATH domains
1a: CATH_1yarA00 (A:13-233)
1b: CATH_1yarB00 (B:13-233)
1c: CATH_1yarC00 (C:13-233)
1d: CATH_1yarD00 (D:13-233)
1e: CATH_1yarH00 (H:1-203)
1f: CATH_1yarI00 (I:1-203)
1g: CATH_1yarJ00 (J:1-203)
1h: CATH_1yarK00 (K:1-203)
1i: CATH_1yarE00 (E:13-233)
1j: CATH_1yarL00 (L:1-203)
1k: CATH_1yarM00 (M:1-203)
1l: CATH_1yarN00 (N:1-203)
1m: CATH_1yarF00 (F:13-233)
1n: CATH_1yarG00 (G:13-233)
2a: CATH_1yarO01 (O:4-221)
2b: CATH_1yarP01 (P:4-221)
2c: CATH_1yarQ01 (Q:4-221)
2d: CATH_1yarR01 (R:4-221)
2e: CATH_1yarS01 (S:4-221)
2f: CATH_1yarT01 (T:4-221)
2g: CATH_1yarU01 (U:4-221)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Thermoplasma acidophilum. Organism_taxid: 2303.
(6)
1a
1yarA00
A:13-233
1b
1yarB00
B:13-233
1c
1yarC00
C:13-233
1d
1yarD00
D:13-233
1e
1yarH00
H:1-203
1f
1yarI00
I:1-203
1g
1yarJ00
J:1-203
1h
1yarK00
K:1-203
1i
1yarE00
E:13-233
1j
1yarL00
L:1-203
1k
1yarM00
M:1-203
1l
1yarN00
N:1-203
1m
1yarF00
F:13-233
1n
1yarG00
G:13-233
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.180, no name defined]
(10)
Thermoplasma acidophilum. Organism_taxid: 2303.
(5)
2a
1yarO01
O:4-221
2b
1yarP01
P:4-221
2c
1yarQ01
Q:4-221
2d
1yarR01
R:4-221
2e
1yarS01
S:4-221
2f
1yarT01
T:4-221
2g
1yarU01
U:4-221
[
close CATH info
]
Pfam Domains
(2, 21)
Info
all PFAM domains
1a: PFAM_Proteasome_1yarG01 (G:31-216)
1b: PFAM_Proteasome_1yarG02 (G:31-216)
1c: PFAM_Proteasome_1yarG03 (G:31-216)
1d: PFAM_Proteasome_1yarG04 (G:31-216)
1e: PFAM_Proteasome_1yarG05 (G:31-216)
1f: PFAM_Proteasome_1yarG06 (G:31-216)
1g: PFAM_Proteasome_1yarG07 (G:31-216)
1h: PFAM_Proteasome_1yarN01 (N:1-178)
1i: PFAM_Proteasome_1yarN02 (N:1-178)
1j: PFAM_Proteasome_1yarN03 (N:1-178)
1k: PFAM_Proteasome_1yarN04 (N:1-178)
1l: PFAM_Proteasome_1yarN05 (N:1-178)
1m: PFAM_Proteasome_1yarN06 (N:1-178)
1n: PFAM_Proteasome_1yarN07 (N:1-178)
2a: PFAM_Proteasome_A_N_1yarG08 (G:13-30)
2b: PFAM_Proteasome_A_N_1yarG09 (G:13-30)
2c: PFAM_Proteasome_A_N_1yarG10 (G:13-30)
2d: PFAM_Proteasome_A_N_1yarG11 (G:13-30)
2e: PFAM_Proteasome_A_N_1yarG12 (G:13-30)
2f: PFAM_Proteasome_A_N_1yarG13 (G:13-30)
2g: PFAM_Proteasome_A_N_1yarG14 (G:13-30)
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Clans
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)
(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
NTN
(93)
Family
:
Proteasome
(36)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(8)
1a
Proteasome-1yarG01
G:31-216
1b
Proteasome-1yarG02
G:31-216
1c
Proteasome-1yarG03
G:31-216
1d
Proteasome-1yarG04
G:31-216
1e
Proteasome-1yarG05
G:31-216
1f
Proteasome-1yarG06
G:31-216
1g
Proteasome-1yarG07
G:31-216
1h
Proteasome-1yarN01
N:1-178
1i
Proteasome-1yarN02
N:1-178
1j
Proteasome-1yarN03
N:1-178
1k
Proteasome-1yarN04
N:1-178
1l
Proteasome-1yarN05
N:1-178
1m
Proteasome-1yarN06
N:1-178
1n
Proteasome-1yarN07
N:1-178
Clan
:
no clan defined [family: Proteasome_A_N]
(20)
Family
:
Proteasome_A_N
(20)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(8)
2a
Proteasome_A_N-1yarG08
G:13-30
2b
Proteasome_A_N-1yarG09
G:13-30
2c
Proteasome_A_N-1yarG10
G:13-30
2d
Proteasome_A_N-1yarG11
G:13-30
2e
Proteasome_A_N-1yarG12
G:13-30
2f
Proteasome_A_N-1yarG13
G:13-30
2g
Proteasome_A_N-1yarG14
G:13-30
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Asym.Unit (801 KB)
Header - Asym.Unit
Biol.Unit 1 (1.5 MB)
Header - Biol.Unit 1
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